←Back to structures

NC_009542.2__YP_001285639.1__phiO18_16__00015

Bact-Vir

NC_009542.2__YP_001285639.1__phiO18_16__00015

Identity

Accession:
NC_009542 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Bielevirus› Aeromonas_phage_phiO18P

TaxID: 2913974

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-68
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.72 47.0 4.40e-01 73.7% 53.4%
3au0A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 42.0 3.13e-01 71.9% 24.2%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 54.0 5.11e-01 89.5% 74.3%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 51.0 5.25e-01 98.2% 94.4%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 54.0 4.10e-01 100.0% 54.6%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.31e-01 100.0% 60.0%
3ab1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 52.0 4.04e-01 96.5% 97.6%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 48.0 3.61e-01 91.2% 51.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.69e-01 96.5% 83.9%
5h8yD02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.60 49.0 3.41e-01 93.0% 72.9%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 45.0 4.30e-01 82.5% 86.8%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.60 50.0 3.94e-01 100.0% 70.6%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.80e-01 78.9% 81.8%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.59 43.0 2.96e-01 82.5% 29.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.45e-01 98.2% 78.5%
6ovbA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.58 50.0 3.49e-01 96.5% 97.3%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 50.0 5.01e-01 100.0% 96.6%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 46.0 3.76e-01 93.0% 90.8%
1mo9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 49.0 3.74e-01 94.7% 49.6%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 3.68e-01 75.4% 60.0%
4r1kB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 40.0 3.17e-01 77.2% 46.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.73e-01 94.7% 87.1%
2rsoA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 45.0 3.93e-01 89.5% 58.7%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 50.0 4.26e-01 100.0% 65.6%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.95e-01 96.5% 72.4%
1d4cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 49.0 3.07e-01 100.0% 57.7%
5jciA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 49.0 3.73e-01 96.5% 99.2%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.46e-01 98.2% 82.2%
5j60B02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 50.0 3.91e-01 100.0% 71.7%
2bcqA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 38.0 3.00e-01 71.9% 82.9%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 4.03e-01 89.5% 78.6%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.55 46.0 3.54e-01 100.0% 77.2%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.79e-01 100.0% 65.5%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 43.0 4.09e-01 93.0% 83.1%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.54 40.0 2.96e-01 80.7% 56.8%
6fhoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 47.0 3.26e-01 100.0% 46.8%
7jsnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 40.0 2.87e-01 86.0% 54.9%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.08e-01 94.7% 77.3%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 40.0 3.31e-01 91.2% 83.1%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 40.0 3.49e-01 89.5% 80.8%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 44.0 3.29e-01 98.2% 53.1%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.38e-01 80.7% 59.6%
3irpX01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.12e-01 91.2% 90.8%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.52 40.0 3.77e-01 98.2% 67.5%
1vq8E02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 40.0 3.47e-01 89.5% 92.5%
5oj2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.13e-01 80.7% 98.0%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621211 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 52.0 5.96e-01 70.2% 95.0%
3511310 4.1.1.224 ↗ beta barrels › SH3 › SH3 › SH3 › Integrase_p58_C 0.78 48.0 5.66e-01 80.7% 100.0%
4930963 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.73 64.0 5.80e-01 96.5% 85.3%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.72 60.0 5.55e-01 89.5% 77.1%
3363212 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.70 50.0 4.21e-01 77.2% 80.0%
3349603 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.70 47.0 4.27e-01 70.2% 59.0%
3307408 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.70 50.0 4.35e-01 77.2% 67.8%
3512902 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.70 55.0 5.59e-01 96.5% 89.1%
3301844 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.69 48.0 4.33e-01 73.7% 87.5%
4000622 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.69 58.0 4.52e-01 96.5% 44.2%
3498703 219.1.1.41 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 0.69 59.0 3.64e-01 100.0% 25.4%
3581817 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.68 59.0 5.63e-01 96.5% 83.1%
3616769 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.68 59.0 4.96e-01 98.2% 57.9%
3612090 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 58.0 5.72e-01 98.2% 90.0%
5025280 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.67 59.0 5.07e-01 98.2% 72.2%
5058925 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.67 58.0 5.48e-01 98.2% 82.9%
3598499 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.11e-01 96.5% 37.1%
4879299 219.1.1.45 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Mac-1 0.66 60.0 3.96e-01 100.0% 34.5%
3526919 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.66 49.0 4.20e-01 87.7% 48.4%
3940934 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.66 45.0 3.85e-01 71.9% 48.4%
3990293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 50.0 5.13e-01 87.7% 85.5%
3794500 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.66 58.0 4.06e-01 100.0% 31.4%
2528545 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 58.0 3.55e-01 100.0% 59.5%
4504212 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.65 58.0 4.31e-01 100.0% 89.7%
3988065 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 47.0 4.38e-01 84.2% 61.3%
5079843 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 51.0 4.99e-01 93.0% 87.7%
3530591 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 55.0 4.30e-01 100.0% 72.8%
3716765 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 50.0 2.86e-01 87.7% 70.9%
3445327 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.61 52.0 4.14e-01 96.5% 80.8%
4957228 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.61 51.0 4.05e-01 100.0% 88.5%
3687138 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 52.0 3.75e-01 96.5% 94.5%
5048573 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 53.0 4.05e-01 100.0% 92.6%
3283215 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.60 40.0 3.89e-01 75.4% 60.0%
119012 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.60 40.0 4.00e-01 75.4% 66.7%
3253768 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.59 53.0 4.94e-01 100.0% 90.0%
3214131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 52.0 4.67e-01 100.0% 91.3%
3285647 2003.1.2.120 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored, NAD_binding_8 0.59 51.0 3.03e-01 100.0% 33.6%
3309117 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.59 51.0 3.90e-01 98.2% 76.3%
3632060 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 51.0 3.04e-01 100.0% 47.3%
3555043 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.59 45.0 4.18e-01 89.5% 64.0%
3439556 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.59 50.0 4.16e-01 98.2% 88.6%
3183098 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.58 50.0 3.13e-01 100.0% 69.0%
4961179 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.58 42.0 4.45e-01 84.2% 92.0%
3429972 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.58 50.0 4.28e-01 100.0% 98.9%
None — 0.58 49.0 3.09e-01 98.2% 70.0%
2635091 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 47.0 3.43e-01 100.0% 67.0%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 45.0 4.30e-01 100.0% 77.9%
3481095 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.49e-01 84.2% 11.9%
3925482 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.56 46.0 2.84e-01 98.2% 52.4%
4605764 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 48.0 4.04e-01 94.7% 100.0%
4028923 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.56 50.0 2.87e-01 100.0% 27.5%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 48.0 4.73e-01 96.5% 95.0%
3965839 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.55 37.0 2.74e-01 73.7% 25.2%
5075211 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.55 39.0 4.08e-01 82.5% 92.0%
4305539 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.55 47.0 3.89e-01 94.7% 96.0%
3562710 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.54 46.0 2.82e-01 100.0% 69.6%
4162406 244.1.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.54 45.0 2.68e-01 98.2% 38.6%
3284081 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 46.0 3.25e-01 100.0% 62.1%
3174528 244.1.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.53 45.0 2.77e-01 100.0% 46.2%
3582871 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 44.0 3.24e-01 98.2% 84.6%
4007656 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.53 40.0 3.16e-01 89.5% 90.3%
3915992 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 45.0 2.74e-01 100.0% 67.3%
3305631 375.1.1.184 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B 0.52 39.0 3.62e-01 82.5% 82.7%
3832353 375.1.1.184 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B 0.52 39.0 2.81e-01 84.2% 34.2%
3229025 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.52 38.0 3.58e-01 82.5% 82.7%
3661265 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.51 39.0 3.08e-01 87.7% 39.2%