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NC_009542.2__YP_001285650.1__phiO18_27__00026

Bact-Vir

NC_009542.2__YP_001285650.1__phiO18_27__00026

Identity

Accession:
NC_009542 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Bielevirus› Aeromonas_phage_phiO18P

TaxID: 2913974

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-147
PDB
Domain cluster: rep: OR438930.1__WMT83785.1__PROACA1A_310__00031__D5-120
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06891.18 best P2_Phage_GpR 81.0 1.20e-22 100.0% 94.7%
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ushA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 41.0 4.60e-01 76.3% 69.9%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.74 37.0 4.69e-01 73.3% 80.2%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.73 37.0 4.68e-01 71.1% 82.3%
2od4B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 38.0 4.59e-01 72.6% 79.8%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.70 37.0 4.52e-01 75.6% 82.7%
3w7bA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 37.0 4.52e-01 71.9% 79.5%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 31.0 3.99e-01 86.7% 72.4%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.69 46.0 5.28e-01 85.9% 92.9%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.69 37.0 4.36e-01 77.0% 76.4%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 39.0 4.54e-01 79.3% 78.7%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 37.0 4.37e-01 76.3% 78.7%
2bbeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 38.0 4.31e-01 74.1% 72.8%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 38.0 4.08e-01 79.3% 64.7%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 38.0 4.43e-01 74.1% 79.4%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 35.0 4.15e-01 79.3% 75.6%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 39.0 4.42e-01 74.1% 78.2%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 36.0 4.35e-01 73.3% 84.5%
3gz7B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 37.0 4.22e-01 77.8% 76.5%
3fmbA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 37.0 4.18e-01 73.3% 75.0%
2pgcC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 37.0 4.32e-01 73.3% 79.4%
3njcA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.64 42.0 4.04e-01 84.4% 58.2%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 37.0 4.20e-01 74.1% 76.5%
1xppD00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.64 33.0 3.74e-01 74.1% 64.4%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.63 51.0 5.26e-01 85.2% 96.1%
2pgcA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 37.0 4.14e-01 74.1% 74.5%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 40.0 3.59e-01 78.5% 45.6%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.62 42.0 4.12e-01 84.4% 63.0%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.62 41.0 4.41e-01 74.1% 77.1%
4r6uA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 36.0 4.05e-01 75.6% 73.8%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 38.0 4.19e-01 77.8% 78.5%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 32.0 3.98e-01 75.6% 84.1%
3ialA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 48.0 3.77e-01 85.2% 79.0%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 35.0 4.04e-01 74.1% 78.2%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.59 34.0 3.63e-01 74.8% 62.0%
2y7jA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 35.0 4.17e-01 83.7% 87.8%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 32.0 3.69e-01 74.1% 75.0%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 33.0 3.79e-01 73.3% 77.3%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.57 49.0 4.99e-01 94.8% 98.5%
1gkxA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 43.0 4.13e-01 85.9% 70.2%
1ie0A00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.57 35.0 3.39e-01 71.9% 53.2%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 36.0 3.71e-01 80.7% 66.7%
1httA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 46.0 3.63e-01 86.7% 91.4%
4azsA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 33.0 4.01e-01 83.0% 96.3%
3l7xA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.55 36.0 3.47e-01 82.2% 56.7%
1emsA02 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.55 36.0 3.74e-01 81.5% 70.0%
1g84A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 4.38e-01 88.1% 95.2%
4dmzA02 3.30.70.2880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 3.68e-01 80.7% 66.4%
1y8oA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 42.0 3.89e-01 85.9% 64.7%
4ndhB00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.54 35.0 3.25e-01 82.2% 49.4%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 34.0 4.06e-01 83.0% 97.7%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.53 35.0 3.79e-01 82.2% 78.8%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 34.0 3.48e-01 87.4% 68.0%
3byqA00 3.30.1330.110 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 0.52 37.0 3.34e-01 74.1% 88.5%
4ofyD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 4.33e-01 89.6% 98.1%
5xukA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.52 26.0 2.83e-01 100.0% 53.0%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.51 37.0 3.70e-01 74.1% 81.8%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943477 310.3.1.9 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › P2_Phage_GpR 0.82 72.0 7.41e-01 100.0% 96.2%
4627501 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.77 43.0 5.09e-01 76.3% 78.7%
4664239 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.71 36.0 4.39e-01 74.1% 73.3%
4994641 304.19.1.1 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.70 38.0 4.43e-01 71.1% 73.7%
4001719 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.65 36.0 4.17e-01 73.3% 75.8%
4928893 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.65 52.0 5.13e-01 85.9% 95.9%
140759 873.1.1.6 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF2507 0.64 42.0 4.12e-01 84.4% 61.4%
5046778 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.63 32.0 3.71e-01 76.3% 65.0%
5072112 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.63 43.0 4.14e-01 83.7% 60.0%
185044 304.61.1.1 ↗ a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Dehydratase_hem 0.63 37.0 3.72e-01 72.6% 56.2%
3966645 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.63 49.0 5.13e-01 83.7% 96.8%
3759752 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.62 38.0 4.24e-01 77.0% 77.1%
1146572 304.152.1.1 ↗ a+b two layers › Alpha-beta plaits › E4-ORF3 › E4-ORF3 › Adeno_E4_ORF3 0.62 41.0 4.44e-01 74.1% 78.4%
5050897 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.61 34.0 4.03e-01 77.0% 82.4%
4335602 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.61 42.0 4.22e-01 84.4% 68.6%
5192 304.4.1.28 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF6974 0.60 36.0 3.95e-01 74.1% 72.5%
3277886 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.60 44.0 4.40e-01 85.9% 74.6%
3603426 304.156.1.3 ↗ a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › DUF5402 0.60 39.0 4.41e-01 83.0% 90.0%
3520411 304.47.1.0 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.60 34.0 3.71e-01 72.6% 67.3%
5073680 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.57 36.0 3.86e-01 82.2% 70.8%
5454 304.124.1.2 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.57 49.0 5.01e-01 94.8% 100.0%
4975701 304.102.1.2 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.57 45.0 3.72e-01 82.2% 87.8%
5024594 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.57 37.0 3.70e-01 82.2% 64.4%
3839688 872.10.1.0 ↗ a+b two layers › Dodecin subunit-like › Secreted protein HP1454 N-terminal domain › Secreted protein HP1454 N-terminal domain 0.56 34.0 4.07e-01 70.4% 90.0%
3988939 225.1.1.17 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c+His_kinase 0.56 46.0 4.26e-01 86.7% 85.1%
3197890 304.61.1.2 ↗ a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like 0.56 38.0 3.23e-01 77.0% 40.9%
3776086 306.10.1.5 ↗ a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › PF31088 0.56 35.0 3.65e-01 87.4% 65.4%
136088 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.55 36.0 3.59e-01 82.2% 62.2%
4964003 241.1.1.29 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF5813 0.55 42.0 4.02e-01 87.4% 69.0%
4927828 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.55 36.0 4.09e-01 81.5% 88.0%
2850632 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.55 36.0 3.99e-01 82.2% 84.0%
3551263 206.1.1.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.53 40.0 2.84e-01 79.3% 69.0%
3204359 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.53 40.0 3.97e-01 80.7% 95.2%
3279453 11.4.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) 0.52 39.0 4.12e-01 90.4% 87.5%
3971851 206.1.1.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kdo 0.52 38.0 3.14e-01 89.6% 42.5%
4932610 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.52 38.0 3.96e-01 86.7% 83.2%
3997189 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.51 33.0 3.88e-01 74.8% 100.0%
5067744 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.51 38.0 3.95e-01 85.2% 84.0%
4950578 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.50 44.0 4.23e-01 93.3% 93.3%
4930046 312.1.1.5 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_tr_C 0.50 39.0 3.84e-01 86.7% 76.6%
3385827 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.50 39.0 4.07e-01 85.9% 90.8%
5057997 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.50 38.0 3.92e-01 85.2% 84.8%
4248927 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.50 36.0 3.77e-01 74.1% 92.0%
4942898 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.50 37.0 3.87e-01 85.2% 83.2%