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NC_009551.1__YP_001285775.1__PfWMP3_10__00010

Bact-Vir

NC_009551.1__YP_001285775.1__PfWMP3_10__00010

Identity

Accession:
NC_009551 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saffermanviridae› Wumptrevirus› Phormidium_phage_Pf-WMP3

TaxID: 2914005

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
Domain cluster: rep: OQ504960.1__WID41994.1__X__00022__D3-68
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 49.0 4.06e-01 100.0% 41.3%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.20e-01 100.0% 72.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.13e-01 98.3% 72.7%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 5.01e-01 96.7% 78.3%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 50.0 3.99e-01 100.0% 42.0%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.62 44.0 4.14e-01 100.0% 60.5%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 50.0 3.83e-01 100.0% 39.3%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 53.0 4.87e-01 96.7% 82.3%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 42.0 3.06e-01 100.0% 26.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.61 47.0 4.77e-01 98.3% 86.7%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 47.0 3.48e-01 100.0% 32.1%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 4.84e-01 100.0% 88.7%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 51.0 4.62e-01 96.7% 80.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 52.0 3.75e-01 100.0% 47.3%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 3.69e-01 81.7% 93.2%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 40.0 3.10e-01 100.0% 30.4%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 48.0 4.16e-01 95.0% 78.7%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.55e-01 75.0% 92.2%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 45.0 3.83e-01 100.0% 54.2%
1hx6B01 2.70.9.30 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 0.56 49.0 3.30e-01 100.0% 70.4%
3n5lA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 47.0 3.68e-01 100.0% 44.1%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 45.0 2.76e-01 93.3% 96.2%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 36.0 3.27e-01 70.0% 86.7%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.17e-01 100.0% 31.2%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.54 36.0 2.90e-01 70.0% 61.5%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 46.0 3.08e-01 100.0% 66.4%
3zlaD01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.54 40.0 3.32e-01 86.7% 86.5%
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.53 41.0 4.24e-01 100.0% 91.4%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.50e-01 83.3% 80.4%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.61e-01 90.0% 22.2%
3gr0D01 3.30.70.1780 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 33.0 3.85e-01 91.7% 92.7%
3gd0A01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.52 46.0 3.03e-01 100.0% 43.2%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.35e-01 81.7% 88.2%
6qu3A02 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 2.55e-01 71.7% 45.3%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 46.0 3.31e-01 100.0% 74.1%
6n59A02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 36.0 3.28e-01 76.7% 90.5%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3734369 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.76 54.0 3.38e-01 100.0% 14.8%
4028559 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.75 44.0 4.97e-01 98.3% 77.8%
3586250 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.75 48.0 4.90e-01 100.0% 66.7%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 6.25e-01 100.0% 91.4%
4231372 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.74 63.0 6.03e-01 100.0% 98.6%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.73 62.0 5.84e-01 100.0% 96.0%
4953913 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.69 53.0 5.35e-01 100.0% 83.3%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.69 52.0 4.62e-01 100.0% 55.6%
5063433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.45e-01 100.0% 96.0%
3513328 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.68 52.0 4.99e-01 91.7% 71.4%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.97e-01 100.0% 75.4%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 50.0 4.92e-01 100.0% 77.8%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.66 49.0 4.68e-01 100.0% 70.0%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 52.0 5.10e-01 100.0% 81.5%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.56e-01 100.0% 68.6%
3264069 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.64 46.0 4.66e-01 100.0% 76.7%
3254634 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.63 54.0 5.00e-01 95.0% 88.0%
3911194 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.63 53.0 4.85e-01 95.0% 83.7%
3914736 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.62 52.0 5.15e-01 95.0% 96.9%
3510942 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.62 53.0 4.97e-01 96.7% 90.7%
3711668 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.62 53.0 4.70e-01 98.3% 87.8%
3846535 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.62 53.0 4.64e-01 96.7% 74.4%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 49.0 4.78e-01 100.0% 81.5%
3597533 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.61 52.0 4.41e-01 98.3% 89.5%
3214587 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 53.0 4.85e-01 98.3% 98.8%
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.00e-01 100.0% 86.5%
3453009 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.61 50.0 4.51e-01 93.3% 75.3%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 48.0 4.50e-01 100.0% 70.7%
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.60 41.0 4.41e-01 100.0% 95.6%
4956064 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 38.0 2.81e-01 70.0% 23.7%
3921414 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.60 49.0 4.56e-01 95.0% 83.5%
4997643 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.59 38.0 2.62e-01 75.0% 18.6%
3539015 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.59 49.0 3.93e-01 95.0% 53.2%
4954114 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.59 48.0 4.81e-01 93.3% 100.0%
3727822 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.59 39.0 2.42e-01 70.0% 49.0%
5072831 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 29.0 2.85e-01 70.0% 42.9%
3602275 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.59 48.0 2.94e-01 98.3% 14.7%
3749060 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.58 48.0 4.47e-01 95.0% 82.5%
5026412 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.58 37.0 2.79e-01 71.7% 25.5%
5041715 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 40.0 3.33e-01 73.3% 39.1%
5022626 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.58 46.0 4.70e-01 91.7% 95.0%
3581513 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.58 50.0 4.59e-01 98.3% 86.3%
4931446 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.58 38.0 2.93e-01 71.7% 29.6%
3615237 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.58 40.0 2.55e-01 75.0% 46.7%
4093822 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.57 43.0 3.82e-01 83.3% 88.9%
5045522 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 2.79e-01 78.3% 46.1%
3970003 7527.1.1.0 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) 0.57 40.0 2.48e-01 76.7% 21.3%
1003912 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.56 45.0 3.83e-01 100.0% 54.2%
5032187 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 4.66e-01 95.0% 98.2%
4532472 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 3.49e-01 81.7% 52.0%
3704667 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.54 38.0 2.42e-01 75.0% 51.6%
3595320 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.41e-01 100.0% 62.4%
5008033 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 41.0 3.89e-01 88.3% 72.0%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.52 34.0 3.44e-01 98.3% 65.0%
4405873 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.52 38.0 3.19e-01 81.7% 60.0%
3803591 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.51 36.0 2.38e-01 76.7% 44.2%
3387865 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 40.0 3.50e-01 88.3% 60.0%
3962711 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.51 36.0 2.46e-01 75.0% 33.2%
3250470 3307.1.1.0 ↗ a+b two layers › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 0.51 44.0 3.88e-01 100.0% 95.6%
3523136 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.50 35.0 2.31e-01 76.7% 42.5%
3597644 831.1.1.0 ↗ a+b two layers › NSFL1 (p97 ATPase) cofactor p47, SEP domain › NSFL1 (p97 ATPase) cofactor p47, SEP domain › NSFL1 (p97 ATPase) cofactor p47, SEP domain 0.50 40.0 3.52e-01 98.3% 57.9%