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NC_009551.1__YP_001285802.1__PfWMP3_37__00037

Bact-Vir

NC_009551.1__YP_001285802.1__PfWMP3_37__00037

Identity

Accession:
NC_009551 ↗
Kingdom:
phage

Quality

68.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saffermanviridae› Wumptrevirus› Phormidium_phage_Pf-WMP3

TaxID: 2914005

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-162
PDB
Domain cluster: rep: MN018232.1__QDH50655.1__X__00189__D210-318
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.77 60.0 6.54e-01 99.3% 98.2%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 41.0 4.71e-01 98.6% 81.4%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.68 48.0 4.97e-01 100.0% 77.7%
3bpsA02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.67 38.0 3.76e-01 100.0% 51.3%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.66 46.0 4.77e-01 99.3% 76.2%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 37.0 4.25e-01 99.3% 76.0%
3ibmB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 34.0 3.35e-01 100.0% 51.4%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 48.0 4.02e-01 83.5% 90.4%
2mizA00 2.60.40.2900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 49.0 4.71e-01 100.0% 78.2%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.59 51.0 4.03e-01 92.1% 96.4%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.59 45.0 3.68e-01 78.4% 100.0%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.58 43.0 4.22e-01 77.0% 100.0%
4aefA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 33.0 3.82e-01 98.6% 78.9%
3lsoA01 2.60.40.2270 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 4.04e-01 77.0% 96.4%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 38.0 4.21e-01 100.0% 85.3%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 45.0 4.15e-01 84.2% 87.8%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 45.0 3.80e-01 83.5% 90.6%
3shsA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 4.17e-01 99.3% 81.3%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 37.0 3.88e-01 98.6% 73.8%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 4.44e-01 100.0% 90.8%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.55 44.0 4.05e-01 83.5% 97.8%
6tfjA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 37.0 4.01e-01 94.2% 82.6%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.54 41.0 4.19e-01 97.8% 81.5%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.54 42.0 4.34e-01 82.0% 93.0%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 40.0 2.98e-01 77.7% 100.0%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.88e-01 79.9% 95.7%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 40.0 3.75e-01 79.9% 94.3%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 4.08e-01 80.6% 97.8%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.53 36.0 3.89e-01 78.4% 82.9%
1ohfA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 48.0 3.71e-01 100.0% 88.9%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 3.79e-01 100.0% 66.7%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 47.0 4.74e-01 99.3% 98.5%
1vjhA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 4.36e-01 93.5% 98.3%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 42.0 3.97e-01 98.6% 74.1%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604637 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.69 41.0 4.48e-01 98.6% 71.3%
3875549 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.65 44.0 3.98e-01 100.0% 49.7%
3220160 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 47.0 4.77e-01 76.3% 99.3%
3249790 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.64 45.0 3.84e-01 100.0% 44.3%
3274984 11.1.5.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.62 42.0 4.05e-01 100.0% 59.5%
1548777 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.60 48.0 4.02e-01 83.5% 90.4%
4943952 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 45.0 4.58e-01 100.0% 77.9%
3979319 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.60 52.0 4.03e-01 92.8% 98.6%
4075543 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.59 45.0 3.49e-01 79.9% 98.4%
None — 0.58 43.0 4.22e-01 77.0% 100.0%
4116729 5084.1.1.6 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF 0.57 43.0 4.06e-01 78.4% 92.9%
5032631 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.56 42.0 3.51e-01 78.4% 97.1%
4294796 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.56 44.0 4.10e-01 82.0% 99.4%
4498349 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.56 44.0 4.08e-01 84.2% 90.0%
901 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.55 44.0 3.97e-01 83.5% 92.6%
3477921 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 48.0 4.64e-01 100.0% 83.9%
5010985 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.55 49.0 3.89e-01 100.0% 74.5%
4362579 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.54 43.0 3.98e-01 82.7% 98.9%
4640183 12.3.1.40 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › TREH_N 0.54 38.0 3.26e-01 80.6% 45.5%
4036894 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.54 43.0 3.87e-01 84.2% 84.7%
3499074 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.53 40.0 3.86e-01 100.0% 68.1%
4055106 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.53 43.0 3.92e-01 84.9% 88.6%
3642325 9.1.1.29 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C 0.53 40.0 3.89e-01 78.4% 90.8%
3252050 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 42.0 3.66e-01 100.0% 55.7%
3174682 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 38.0 3.74e-01 82.7% 70.3%
4485546 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.53 42.0 3.82e-01 84.2% 88.6%
3260144 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 40.0 3.32e-01 81.3% 56.1%
3485290 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 47.0 3.98e-01 100.0% 86.8%
4039744 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.52 48.0 3.62e-01 100.0% 85.2%
3272661 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.52 39.0 3.24e-01 78.4% 53.5%
4215475 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.52 40.0 2.52e-01 81.3% 90.9%
3176266 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 37.0 3.81e-01 81.3% 77.0%
3734952 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.51 41.0 3.76e-01 85.6% 93.0%
4030650 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.51 38.0 3.77e-01 77.7% 97.3%
3267244 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.51 40.0 3.37e-01 84.2% 100.0%
3609563 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 44.0 3.59e-01 92.8% 61.0%
3251513 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.51 41.0 3.38e-01 85.6% 100.0%
4991389 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.51 45.0 3.68e-01 100.0% 74.0%
3743844 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 36.0 3.73e-01 82.0% 76.3%
3283087 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.51 43.0 2.75e-01 95.0% 41.0%
3165307 5084.5.4.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.51 42.0 2.95e-01 88.5% 59.2%
4014417 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 37.0 3.64e-01 78.4% 69.0%
3182983 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.50 37.0 2.61e-01 77.7% 25.3%