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NC_009552.3__YP_001285836.1__GBVE2_p30__00030

Bact-Vir

Identity

Accession:: NC_009552 ↗
Kingdom:: phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Geobacillus_virus_E2

TaxID: 447909

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-54

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2bdeA03	1.20.58.1160	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.86	75.0	6.17e-01	100.0%	54.5%
2xzmO02	1.10.287.10	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding	0.85	73.0	6.22e-01	100.0%	61.4%
2e9xA01	1.20.58.1030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.78	62.0	4.60e-01	100.0%	32.8%
1skvA00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.77	61.0	5.51e-01	100.0%	62.5%
5jjxA01	1.25.40.1040	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.74	56.0	3.44e-01	92.9%	12.8%
1p49A02	1.10.287.550	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.73	58.0	5.38e-01	100.0%	71.2%
1o9gA02	1.10.287.540	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.72	55.0	5.56e-01	97.6%	97.7%
6ldkA01	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.71	60.0	4.05e-01	100.0%	27.3%
3r4iA02	6.10.140.960	Special › Helix non-globular › Helix Hairpins ›	0.66	54.0	4.85e-01	92.9%	80.0%
2k9pA00	1.10.287.920	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pheromone alpha factor receptor.	0.64	55.0	4.54e-01	100.0%	56.2%
2ymmA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.64	53.0	4.42e-01	92.9%	76.7%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4548859	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.98	91.0	6.54e-01	100.0%	40.0%
4600200	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.97	90.0	6.31e-01	100.0%	36.5%
4949979	605.1.1.2 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim	0.92	83.0	7.11e-01	100.0%	64.6%
5016327	605.1.1.2 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim	0.91	81.0	6.75e-01	100.0%	60.0%
3218433	3652.1.1.0 ↗	alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1	0.89	78.0	7.44e-01	100.0%	84.0%
3264784	2003.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains	0.83	70.0	3.97e-01	100.0%	9.3%
4958320	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.81	71.0	4.77e-01	100.0%	89.0%
3608854	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.77	64.0	4.05e-01	100.0%	41.7%
5047297	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.71	54.0	5.24e-01	100.0%	78.2%