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NC_009737.2__YP_010579117.1__BV1_gp58__00012
Bact-VirNC_009737.2__YP_010579117.1__BV1_gp58__00012
Identity
- Accession:
- NC_009737 ↗
- Kingdom:
- phage
Quality
89.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-61
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.74 | 55.0 | 5.09e-01 | 80.0% | 72.4% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 53.0 | 4.84e-01 | 80.0% | 75.3% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.68 | 51.0 | 5.44e-01 | 86.7% | 98.0% |
| 3aqoA01 | 3.30.70.3400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 48.0 | 4.34e-01 | 75.0% | 100.0% |
| 4ybnB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 57.0 | 3.95e-01 | 100.0% | 59.0% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.65 | 58.0 | 5.38e-01 | 100.0% | 78.9% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 56.0 | 4.47e-01 | 100.0% | 80.6% |
| 2ol5A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 55.0 | 3.97e-01 | 100.0% | 68.9% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.62 | 52.0 | 3.88e-01 | 96.7% | 94.0% |
| 1xreA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.62 | 53.0 | 4.36e-01 | 96.7% | 60.7% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.62 | 52.0 | 4.62e-01 | 96.7% | 96.7% |
| 3u5wA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 53.0 | 4.24e-01 | 100.0% | 77.0% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.62 | 52.0 | 4.26e-01 | 100.0% | 73.0% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.61 | 51.0 | 4.18e-01 | 95.0% | 58.4% |
| 2czrA02 | 3.90.79.30 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain | 0.60 | 46.0 | 3.65e-01 | 83.3% | 42.5% |
| 5ee2A00 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.60 | 44.0 | 3.60e-01 | 81.7% | 82.8% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.60 | 50.0 | 4.39e-01 | 96.7% | 94.7% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 38.0 | 3.97e-01 | 70.0% | 100.0% |
| 2o3iA01 | 3.40.1610.10 | Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain | 0.57 | 46.0 | 3.17e-01 | 95.0% | 74.6% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 47.0 | 4.36e-01 | 96.7% | 97.5% |
| 4n0rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 44.0 | 3.96e-01 | 96.7% | 62.4% |
| 3buxB03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 40.0 | 3.66e-01 | 100.0% | 55.8% |
| 2w3sB03 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.55 | 37.0 | 3.30e-01 | 80.0% | 45.7% |
| 2iq1A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 45.0 | 3.10e-01 | 100.0% | 61.5% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 33.0 | 3.18e-01 | 100.0% | 52.2% |
| 5wfiA01 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 40.0 | 3.19e-01 | 78.3% | 47.1% |
| 3snoA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.55 | 37.0 | 3.02e-01 | 70.0% | 95.0% |
| 2i0oA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 43.0 | 2.95e-01 | 100.0% | 57.8% |
| 3jrqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 44.0 | 2.99e-01 | 100.0% | 57.2% |
| 1f97A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.79e-01 | 96.7% | 64.7% |
| 5g5gC03 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.53 | 37.0 | 3.28e-01 | 80.0% | 47.3% |
| 3pvlA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 45.0 | 3.97e-01 | 100.0% | 94.8% |
| 4ccjA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.53 | 44.0 | 3.03e-01 | 98.3% | 65.0% |
| 1wfjA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 43.0 | 3.59e-01 | 100.0% | 73.4% |
| 2v72A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 42.0 | 3.41e-01 | 100.0% | 42.3% |
| 1oeyA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 44.0 | 4.02e-01 | 96.7% | 90.2% |
| 2pq0A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.52 | 45.0 | 3.83e-01 | 96.7% | 81.0% |
| 4m0wA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 43.0 | 3.34e-01 | 93.3% | 96.4% |
| 3qfgA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 44.0 | 3.41e-01 | 100.0% | 55.2% |
| 1wjnA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 42.0 | 3.72e-01 | 96.7% | 83.5% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.51 | 40.0 | 3.29e-01 | 100.0% | 42.9% |
| 3webA00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 41.0 | 3.34e-01 | 96.7% | 57.6% |
| 6l4lA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 41.0 | 3.46e-01 | 98.3% | 70.7% |
| 1k8rB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 39.0 | 3.62e-01 | 100.0% | 67.1% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.80 | 60.0 | 6.05e-01 | 80.0% | 93.2% |
| 4007508 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.79 | 56.0 | 5.97e-01 | 83.3% | 90.0% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.77 | 54.0 | 5.93e-01 | 86.7% | 97.8% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.76 | 53.0 | 5.82e-01 | 85.0% | 97.8% |
| 3968122 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.76 | 52.0 | 5.67e-01 | 75.0% | 95.6% |
| 4995671 | 3115.1.1.12 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 | 0.75 | 55.0 | 5.92e-01 | 83.3% | 94.0% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.74 | 56.0 | 5.40e-01 | 83.3% | 82.9% |
| 146929 | 3115.3.1.1 ↗ | a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 | 0.72 | 52.0 | 5.32e-01 | 80.0% | 82.1% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.67 | 50.0 | 5.30e-01 | 83.3% | 96.0% |
| 3390562 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.67 | 52.0 | 4.98e-01 | 86.7% | 72.9% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.66 | 55.0 | 5.55e-01 | 100.0% | 93.3% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.64 | 55.0 | 5.17e-01 | 100.0% | 84.0% |
| 3968768 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.63 | 50.0 | 4.69e-01 | 86.7% | 97.3% |
| 3892042 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.62 | 51.0 | 4.46e-01 | 86.7% | 61.2% |
| 3510929 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.62 | 53.0 | 3.54e-01 | 100.0% | 35.0% |
| 5059796 | 4326.1.1.0 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like | 0.60 | 51.0 | 4.92e-01 | 100.0% | 84.1% |
| 3220041 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 49.0 | 4.22e-01 | 93.3% | 77.0% |
| 5070550 | 806.1.1.1 ↗ | a+b four layers › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › AFOR_N | 0.60 | 50.0 | 3.71e-01 | 100.0% | 41.7% |
| 4867320 | 221.1.1.66 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PIK3CG_ABD | 0.59 | 49.0 | 4.22e-01 | 96.7% | 93.1% |
| 3399432 | 382.1.1.14 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 | 0.59 | 42.0 | 3.87e-01 | 90.0% | 57.5% |
| 5038360 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.58 | 47.0 | 3.18e-01 | 93.3% | 79.2% |
| 5038375 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.57 | 46.0 | 3.20e-01 | 88.3% | 37.0% |
| 3281602 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.57 | 39.0 | 4.26e-01 | 86.7% | 91.7% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.57 | 45.0 | 3.06e-01 | 88.3% | 33.3% |
| 4231372 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.56 | 38.0 | 3.74e-01 | 75.0% | 100.0% |
| 3838132 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.55 | 47.0 | 4.27e-01 | 100.0% | 70.2% |
| 3243974 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.54 | 43.0 | 3.53e-01 | 93.3% | 66.4% |
| 3939821 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.54 | 45.0 | 2.84e-01 | 98.3% | 45.6% |
| 3177941 | 221.1.1.51 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 | 0.53 | 44.0 | 3.71e-01 | 100.0% | 66.1% |
| 3704468 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 45.0 | 3.72e-01 | 96.7% | 91.8% |
| 4086554 | 11.10.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Sina_TRAF | 0.53 | 40.0 | 3.14e-01 | 83.3% | 45.2% |
| 3929515 | 382.1.1.21 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF28966 | 0.53 | 46.0 | 3.89e-01 | 100.0% | 79.0% |
| 4151822 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.53 | 35.0 | 3.31e-01 | 96.7% | 54.7% |
| 3564958 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.53 | 43.0 | 3.82e-01 | 93.3% | 75.6% |
| 4471982 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.52 | 42.0 | 3.00e-01 | 98.3% | 84.8% |
| 4008896 | 11.1.1.1286 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27224 | 0.52 | 45.0 | 3.60e-01 | 100.0% | 48.0% |
| 3920703 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.51 | 42.0 | 2.76e-01 | 98.3% | 49.4% |
| 3420651 | 109.4.1.1521 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif | 0.51 | 43.0 | 2.77e-01 | 100.0% | 36.8% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 44.0 | 4.29e-01 | 96.7% | 98.5% |
| 4284428 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.51 | 38.0 | 3.20e-01 | 88.3% | 54.4% |
| 4259426 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.51 | 39.0 | 3.15e-01 | 88.3% | 52.6% |
| 4271417 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.51 | 40.0 | 2.80e-01 | 95.0% | 77.7% |
| 3307527 | 109.4.1.619 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase | 0.50 | 42.0 | 3.38e-01 | 100.0% | 91.9% |
| 3802249 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.50 | 42.0 | 2.52e-01 | 100.0% | 22.6% |
| 4524847 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.50 | 38.0 | 3.11e-01 | 88.3% | 50.8% |
| 3821185 | 109.4.1.1476 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif | 0.50 | 42.0 | 2.45e-01 | 100.0% | 19.0% |
| 3315113 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.50 | 43.0 | 2.75e-01 | 100.0% | 33.4% |
| 4184275 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.50 | 42.0 | 2.73e-01 | 98.3% | 46.3% |
| 6168 | 221.1.1.54 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ras_bdg_2 | 0.50 | 39.0 | 3.62e-01 | 100.0% | 67.1% |