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NC_009804.1__YP_001467999.1__P74p29__00029
Bact-VirNC_009804.1__YP_001467999.1__P74p29__00029
Identity
- Accession:
- NC_009804 ↗
- Kingdom:
- phage
Quality
82.2
mean pLDDT
Taxonomy
TaxID: 2914007
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-89
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7toiA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 45.0 | 3.44e-01 | 91.5% | 89.8% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.55 | 35.0 | 3.44e-01 | 80.5% | 58.2% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.53 | 38.0 | 3.77e-01 | 75.6% | 79.5% |
| 3ikhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 41.0 | 2.82e-01 | 84.1% | 93.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3642777 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 45.0 | 3.92e-01 | 95.1% | 53.6% |
| 2325431 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.58 | 45.0 | 3.37e-01 | 86.6% | 42.6% |
| 3530959 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 44.0 | 3.96e-01 | 100.0% | 57.5% |
| 3966774 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.57 | 40.0 | 4.04e-01 | 75.6% | 73.8% |
| 3581024 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.54 | 37.0 | 4.02e-01 | 70.7% | 85.7% |
| 3393434 | 108.1.1.123 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_EFHB_C | 0.53 | 36.0 | 3.61e-01 | 90.2% | 68.2% |
| 3347236 | 109.54.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 | 0.52 | 35.0 | 3.04e-01 | 70.7% | 59.3% |
| None | — | 0.51 | 40.0 | 3.87e-01 | 95.1% | 73.7% | |
| 3407327 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.51 | 36.0 | 3.70e-01 | 98.8% | 77.5% |
| 3298666 | 109.54.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 | 0.51 | 35.0 | 2.17e-01 | 70.7% | 15.2% |
| 3936544 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 40.0 | 3.37e-01 | 87.8% | 70.7% |
| 3311036 | 109.8.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Arp2/3 complex 16 KDa subunit ARPC5 › Arp2/3 complex 16 KDa subunit ARPC5 | 0.50 | 35.0 | 3.30e-01 | 81.7% | 59.0% |
| 4167579 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.50 | 39.0 | 3.59e-01 | 86.6% | 89.1% |