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NC_009812.1__YP_001468667.1__LiPB025_gp28__00028

Bact-Vir

NC_009812.1__YP_001468667.1__LiPB025_gp28__00028

Identity

Accession:
NC_009812 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jelitavirus› Listeria_phage_B025

TaxID: 330396

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-129
PDB
Domain cluster: rep: OK896991.1__UDY80742.1__X__00073__D5-103
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hk0B00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.85 69.0 7.50e-01 99.2% 100.0%
5uctB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.85 64.0 7.13e-01 96.0% 98.0%
3jscA00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.83 61.0 6.94e-01 96.8% 99.0%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.82 63.0 6.89e-01 98.4% 97.1%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.80 68.0 7.15e-01 99.2% 97.4%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 42.0 5.53e-01 83.3% 94.4%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.73 37.0 5.21e-01 80.2% 100.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.68 37.0 4.04e-01 84.1% 63.5%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.68 62.0 5.75e-01 97.6% 88.3%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.68 37.0 3.48e-01 81.0% 45.0%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.73e-01 96.8% 78.2%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 41.0 4.12e-01 87.3% 70.1%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.14e-01 96.0% 70.5%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 51.0 4.82e-01 96.0% 95.9%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 4.04e-01 82.5% 87.8%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 35.0 3.85e-01 81.7% 77.9%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 4.40e-01 100.0% 93.3%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.53 32.0 3.56e-01 80.2% 75.5%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 3.65e-01 75.4% 95.8%
4hqnA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.51 17.0 2.29e-01 82.5% 49.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2046239 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.85 64.0 7.13e-01 96.0% 98.0%
4928262 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.84 71.0 7.58e-01 98.4% 100.0%
2507392 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.83 69.0 7.28e-01 99.2% 96.4%
3955562 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.82 66.0 7.27e-01 98.4% 100.0%
4969376 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.80 70.0 7.31e-01 99.2% 98.3%
5045554 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.78 67.0 6.96e-01 99.2% 95.8%
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.77 42.0 5.62e-01 81.0% 98.6%
3450257 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.75 41.0 4.75e-01 78.6% 72.6%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.74 41.0 5.27e-01 81.7% 93.3%
4008775 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.73 69.0 6.63e-01 100.0% 100.0%
3990085 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 6.39e-01 98.4% 90.8%
3183108 4.1.1.69 ↗ beta barrels › SH3 › SH3 › SH3 › Clr2 0.69 54.0 4.72e-01 81.7% 80.5%
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 37.0 4.96e-01 77.8% 97.1%
1688342 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 62.0 5.77e-01 98.4% 88.4%
3963504 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 61.0 6.06e-01 99.2% 96.2%
4960540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 34.0 4.76e-01 81.0% 100.0%
4668960 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.47e-01 92.9% 76.4%
4400596 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.63 42.0 3.91e-01 93.7% 53.8%
5036729 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 39.0 4.01e-01 84.9% 67.5%
5000523 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 39.0 4.03e-01 84.9% 70.0%
3424637 4.1.1.313 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7912 0.59 40.0 4.45e-01 84.9% 91.6%
3213653 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 35.0 4.31e-01 76.2% 95.0%
3639466 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.58 41.0 3.97e-01 89.7% 64.1%
3788630 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.57 40.0 3.98e-01 84.9% 68.1%
4941652 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 39.0 3.98e-01 86.5% 72.8%
3931232 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 33.0 3.35e-01 73.0% 61.6%
2099294 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 38.0 3.65e-01 75.4% 95.8%
1553361 2.1.1.5 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N 0.52 30.0 3.51e-01 98.4% 82.4%
3802808 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.51 40.0 3.83e-01 84.9% 72.4%