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NC_009813.1__YP_001468710.1__LiPB054_gp06__00006

Bact-Vir

Identity

Accession:: NC_009813 ↗
Kingdom:: phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Listeria_phage_B054

TaxID: 330397

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-178

PDB

Domain cluster: rep: OL597546.1__UUB23297.1__X__00001__D24-147

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF09979.15 best	DUF2213	183.8	3.60e-54	92.3%	98.8%

D2 medium residues 194-256

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2yo3A04	1.20.5.2280	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.82	72.0	6.98e-01	100.0%	85.5%
1ntcA00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.64	35.0	3.09e-01	73.0%	37.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3518012	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.74	54.0	3.46e-01	77.8%	16.3%

D3 medium residues 292-357

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4i9oA00	1.10.246.20	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain	0.62	43.0	4.12e-01	72.7%	75.6%
6qdjA01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	41.0	3.94e-01	72.7%	92.1%
3nbiA01	1.10.8.1020	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain	0.59	39.0	4.12e-01	71.2%	77.6%
1mjtB01	3.90.340.10	Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1	0.58	42.0	3.34e-01	75.8%	65.9%
3jvoA00	1.10.3230.30	Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein	0.56	46.0	4.11e-01	92.4%	93.8%
1e6cA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.55	44.0	3.35e-01	89.4%	38.8%
1urjA03	1.10.150.560	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.55	40.0	3.69e-01	75.8%	91.5%
2vk9A04	1.10.274.80	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 ›	0.53	36.0	3.18e-01	71.2%	86.5%
2de2A01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.52	44.0	3.20e-01	95.5%	36.1%
7f16R01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	36.0	2.45e-01	75.8%	47.7%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3391169	103.4.1.25 ↗	alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF27628	0.65	46.0	4.60e-01	74.2%	74.3%
3939938	103.4.1.1 ↗	alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX	0.62	43.0	3.99e-01	72.7%	68.2%
3666890	223.1.1.28 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N	0.58	40.0	2.80e-01	75.8%	22.9%
4032765	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.54	37.0	3.09e-01	71.2%	47.0%
3885611	150.3.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine	0.52	38.0	2.96e-01	80.3%	69.4%