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NC_009813.1__YP_001468726.1__LiPB054_gp22__00022
Bact-VirNC_009813.1__YP_001468726.1__LiPB054_gp22__00022
Identity
- Accession:
- NC_009813 ↗
- Kingdom:
- phage
Quality
90.7
mean pLDDT
Cluster
View cluster (16 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-109
Domain cluster:
rep: MN604230.1__QGF21724.1__Sam112_gp20__00020__D22-108
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bkbA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.86 | 57.0 | 6.61e-01 | 100.0% | 92.3% |
| 2ckkA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 38.0 | 4.67e-01 | 100.0% | 70.2% |
| 2wfwB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 52.0 | 5.96e-01 | 100.0% | 88.1% |
| 3qr8A01 | 2.40.50.230 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain | 0.79 | 58.0 | 5.96e-01 | 100.0% | 79.8% |
| 8aasC01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 53.0 | 5.00e-01 | 100.0% | 60.8% |
| 3aqqA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 54.0 | 5.17e-01 | 100.0% | 65.7% |
| 2k5nA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.75 | 52.0 | 5.61e-01 | 100.0% | 85.1% |
| 3kf8B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 56.0 | 5.00e-01 | 100.0% | 60.0% |
| 2qcpX01 | 2.40.50.320 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF | 0.70 | 52.0 | 5.65e-01 | 100.0% | 92.0% |
| 4joiC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 52.0 | 4.72e-01 | 100.0% | 58.5% |
| 3pqiA01 | 2.40.50.230 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain | 0.68 | 59.0 | 6.11e-01 | 100.0% | 97.6% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 57.0 | 5.67e-01 | 100.0% | 91.1% |
| 2j4xA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.64 | 45.0 | 4.94e-01 | 100.0% | 90.3% |
| 3u4zA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 52.0 | 4.86e-01 | 100.0% | 70.6% |
| 2qw7C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.64 | 56.0 | 5.43e-01 | 100.0% | 85.3% |
| 3rd4B00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.64 | 51.0 | 5.29e-01 | 100.0% | 91.5% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.63 | 46.0 | 5.02e-01 | 100.0% | 91.9% |
| 2awnC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 36.0 | 4.15e-01 | 88.6% | 82.8% |
| 3f1zI00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 52.0 | 4.79e-01 | 100.0% | 69.8% |
| 1dgsA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 47.0 | 5.15e-01 | 100.0% | 98.6% |
| 3d3rA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 43.0 | 4.49e-01 | 80.7% | 78.3% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 46.0 | 4.81e-01 | 100.0% | 90.1% |
| 7k98B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 55.0 | 5.00e-01 | 100.0% | 81.6% |
| 1smxA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 49.0 | 4.97e-01 | 98.9% | 92.0% |
| 6gmhH01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 50.0 | 4.31e-01 | 100.0% | 97.9% |
| 3csqA02 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.55 | 44.0 | 3.64e-01 | 88.6% | 70.7% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.51 | 25.0 | 3.30e-01 | 100.0% | 87.0% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948035 | 2.1.1.96 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Gp138_N | 0.90 | 85.0 | 6.31e-01 | 100.0% | 51.5% |
| 3980538 | 2.7.1.1 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V | 0.79 | 60.0 | 6.52e-01 | 100.0% | 92.0% |
| 4407567 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.77 | 53.0 | 6.02e-01 | 100.0% | 95.4% |
| 3278081 | 2.4.1.15 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2, CysA_C_terminal | 0.76 | 51.0 | 4.53e-01 | 87.5% | 50.0% |
| 4165306 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.76 | 50.0 | 4.66e-01 | 86.4% | 56.2% |
| 168736 | 2.1.1.3 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD | 0.75 | 52.0 | 5.89e-01 | 100.0% | 95.5% |
| 4994226 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.74 | 49.0 | 4.34e-01 | 87.5% | 48.0% |
| 5058911 | 2.7.1.0 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N | 0.74 | 63.0 | 5.81e-01 | 100.0% | 71.8% |
| 4990915 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 51.0 | 5.63e-01 | 95.5% | 88.6% |
| 4990974 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.74 | 44.0 | 4.47e-01 | 87.5% | 61.2% |
| 5077487 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.73 | 47.0 | 4.02e-01 | 87.5% | 41.4% |
| 3262589 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 52.0 | 4.72e-01 | 100.0% | 55.0% |
| 3970047 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 53.0 | 5.82e-01 | 100.0% | 94.3% |
| 3619972 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 52.0 | 5.73e-01 | 100.0% | 94.3% |
| 3212560 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 51.0 | 5.60e-01 | 100.0% | 92.9% |
| 3212056 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 53.0 | 5.51e-01 | 100.0% | 85.0% |
| 4484212 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.71 | 52.0 | 5.37e-01 | 100.0% | 80.7% |
| 3279044 | 2.1.1.314 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27099 | 0.71 | 48.0 | 5.55e-01 | 97.7% | 95.4% |
| 3989629 | 2.1.1.38 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RNB | 0.70 | 49.0 | 5.40e-01 | 100.0% | 91.4% |
| 4278259 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.69 | 44.0 | 3.87e-01 | 89.8% | 45.6% |
| 3587502 | 2.1.1.38 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RNB | 0.68 | 48.0 | 5.15e-01 | 100.0% | 85.3% |
| 4461636 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.68 | 47.0 | 5.22e-01 | 97.7% | 91.3% |
| 185474 | 2.1.1.96 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Gp138_N | 0.68 | 59.0 | 6.00e-01 | 100.0% | 93.1% |
| 3244963 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 54.0 | 5.29e-01 | 98.9% | 78.9% |
| 4062730 | 2.1.1.26 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB | 0.67 | 52.0 | 5.48e-01 | 100.0% | 88.7% |
| 3274757 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 51.0 | 5.41e-01 | 100.0% | 94.7% |
| 3704389 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 52.0 | 5.34e-01 | 100.0% | 88.2% |
| 4680940 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.65 | 48.0 | 5.19e-01 | 100.0% | 92.0% |
| 3591158 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 55.0 | 4.89e-01 | 100.0% | 64.8% |
| 4457231 | 2.16.1.1 ↗ | beta barrels › OB-fold › EutN/CcmL-like › EutN/CcmL-like › EutN_CcmL | 0.65 | 56.0 | 5.38e-01 | 100.0% | 81.8% |
| 5037634 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 50.0 | 5.10e-01 | 100.0% | 87.1% |
| 3612837 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 59.0 | 5.18e-01 | 100.0% | 89.6% |
| 4966388 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.64 | 52.0 | 5.36e-01 | 100.0% | 90.6% |
| 3586555 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 51.0 | 5.25e-01 | 100.0% | 89.4% |
| 4990168 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 42.0 | 4.83e-01 | 98.9% | 92.3% |
| 5082734 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 55.0 | 4.99e-01 | 100.0% | 71.7% |
| 3184493 | 2.1.1.59 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1 | 0.62 | 57.0 | 4.86e-01 | 100.0% | 70.7% |
| 3247265 | 2.1.1.105 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB | 0.62 | 58.0 | 4.75e-01 | 100.0% | 64.0% |
| 4095704 | 2.1.1.272 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28196 | 0.61 | 45.0 | 4.53e-01 | 100.0% | 76.7% |
| 3661229 | 2.1.1.226 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29086 | 0.60 | 49.0 | 4.80e-01 | 98.9% | 80.0% |
| 4928896 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 55.0 | 5.12e-01 | 100.0% | 81.8% |
| 4964458 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 53.0 | 5.00e-01 | 100.0% | 81.0% |
| 3593783 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 55.0 | 5.14e-01 | 100.0% | 90.5% |
| 3712485 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 51.0 | 4.01e-01 | 100.0% | 45.6% |
| 3489454 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 51.0 | 5.03e-01 | 95.5% | 91.6% |
| 3700345 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 52.0 | 4.86e-01 | 100.0% | 83.6% |
| 4027653 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.56 | 48.0 | 4.30e-01 | 97.7% | 67.2% |
| 5072315 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.55 | 50.0 | 4.44e-01 | 100.0% | 98.4% |
| 1173319 | 325.1.6.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif | 0.55 | 44.0 | 3.65e-01 | 88.6% | 71.6% |
| 4428246 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.54 | 39.0 | 2.41e-01 | 76.1% | 47.7% |
| 4180663 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.53 | 48.0 | 4.24e-01 | 98.9% | 96.0% |
| 3163776 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.53 | 48.0 | 4.22e-01 | 100.0% | 94.6% |
| 3720280 | 719.2.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like | 0.51 | 44.0 | 3.96e-01 | 97.7% | 99.2% |