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NC_009813.1__YP_001468731.1__LiPB054_gp27__00027

Bact-Vir

NC_009813.1__YP_001468731.1__LiPB054_gp27__00027

Identity

Accession:
NC_009813 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Listeria_phage_B054

TaxID: 330397

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-67
PDB
Domain cluster: rep: OP534061.1__UYE92473.1__H1_53__00053__D2-54
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jykA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.66 45.0 3.12e-01 71.2% 32.8%
4jd0A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.64 44.0 2.97e-01 71.2% 28.2%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 33.0 2.64e-01 77.3% 27.5%
3r4rA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.13e-01 77.3% 55.7%
2vzwB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 43.0 3.44e-01 92.4% 88.6%
2y6pB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 39.0 2.73e-01 80.3% 46.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4432923 7516.1.1.11 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CTP_transf_3 0.71 49.0 3.25e-01 71.2% 31.4%
4678666 7516.1.1.11 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CTP_transf_3 0.69 48.0 3.20e-01 72.7% 36.4%
3639060 223.1.1.106 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF7891 0.66 39.0 3.46e-01 74.2% 41.1%
5039313 3769.1.1.0 ↗ 0.58 38.0 4.31e-01 89.4% 100.0%
4032899 223.1.1.45 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GdpP_PAS 0.58 35.0 3.16e-01 72.7% 44.4%
4303077 213.1.1.66 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hisat_C 0.52 40.0 3.04e-01 86.4% 61.7%
5041727 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.52 40.0 3.05e-01 83.3% 85.0%
D2 medium residues 71-112
PDB
Domain cluster: representative