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NC_009819.1__YP_001469191.1__P9_gp11__00011
Bact-VirNC_009819.1__YP_001469191.1__P9_gp11__00011
Identity
- Accession:
- NC_009819 ↗
- Kingdom:
- phage
Quality
94.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-65
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p65A00 | 6.10.140.90 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 34.0 | 3.62e-01 | 79.4% | 43.9% |
| 1vyiA00 | 1.20.120.820 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain | 0.66 | 43.0 | 3.60e-01 | 95.2% | 37.8% |
| 4ht4A00 | 3.30.930.30 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › | 0.65 | 49.0 | 3.45e-01 | 81.0% | 90.2% |
| 7xinA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.65 | 35.0 | 2.91e-01 | 95.2% | 30.3% |
| 4hfvA02 | 6.10.280.170 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Substrate of the Dot/Icm secretion system | 0.62 | 56.0 | 5.34e-01 | 98.4% | 84.5% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 53.0 | 4.20e-01 | 100.0% | 49.6% |
| 3nftA00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.60 | 53.0 | 3.53e-01 | 100.0% | 63.4% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.59 | 31.0 | 3.05e-01 | 98.4% | 40.8% |
| 6ks6Z01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.58 | 50.0 | 3.34e-01 | 100.0% | 34.6% |
| 3ncvA02 | 3.30.1370.100 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain | 0.57 | 33.0 | 2.99e-01 | 95.2% | 39.6% |
| 6liuC02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 45.0 | 3.61e-01 | 98.4% | 45.7% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.57 | 37.0 | 3.25e-01 | 84.1% | 47.7% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 44.0 | 3.80e-01 | 100.0% | 54.6% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 43.0 | 3.72e-01 | 100.0% | 54.1% |
| 7wu7501 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 49.0 | 3.87e-01 | 100.0% | 91.3% |
| 8dkrB01 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.54 | 46.0 | 3.17e-01 | 96.8% | 43.2% |
| 6juvB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.74e-01 | 93.7% | 65.3% |
| 3es5A02 | 1.20.272.60 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.53 | 49.0 | 3.86e-01 | 100.0% | 59.0% |
| 5g5gA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.53 | 36.0 | 3.25e-01 | 71.4% | 76.7% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.53 | 47.0 | 3.33e-01 | 100.0% | 33.9% |
| 4tzmB00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.52 | 41.0 | 2.87e-01 | 88.9% | 88.1% |
| 4lurA02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 42.0 | 2.98e-01 | 100.0% | 75.0% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.51 | 39.0 | 3.28e-01 | 81.0% | 79.6% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.51 | 41.0 | 4.12e-01 | 96.8% | 84.8% |
| 4jn3A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 44.0 | 3.09e-01 | 96.8% | 66.0% |
| 5dynA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 39.0 | 3.32e-01 | 84.1% | 84.9% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 37.0 | 3.78e-01 | 79.4% | 89.8% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 43.0 | 2.81e-01 | 96.8% | 73.6% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3600342 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.76 | 53.0 | 3.50e-01 | 100.0% | 20.0% |
| 3834208 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.70 | 49.0 | 3.19e-01 | 100.0% | 19.2% |
| None | — | 0.69 | 47.0 | 2.92e-01 | 100.0% | 12.8% | |
| 3940660 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.67 | 54.0 | 3.07e-01 | 100.0% | 9.3% |
| 3587733 | 4980.1.1.0 ↗ | alpha superhelices › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 | 0.66 | 37.0 | 3.33e-01 | 92.1% | 38.9% |
| 4972215 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.64 | 57.0 | 3.89e-01 | 100.0% | 29.0% |
| 5049161 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.62 | 50.0 | 3.39e-01 | 100.0% | 25.7% |
| 3687340 | 3291.1.1.8 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › FTA4 | 0.62 | 41.0 | 2.92e-01 | 100.0% | 21.5% |
| 4073860 | 5086.1.1.67 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Neurensin | 0.61 | 45.0 | 3.45e-01 | 100.0% | 36.3% |
| 3610966 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 45.0 | 2.96e-01 | 81.0% | 48.2% |
| 5012108 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 42.0 | 2.77e-01 | 100.0% | 15.7% |
| 3523606 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 52.0 | 3.13e-01 | 100.0% | 15.5% |
| 4026519 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.60 | 40.0 | 3.13e-01 | 96.8% | 32.6% |
| 5083931 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.60 | 42.0 | 3.04e-01 | 96.8% | 26.9% |
| 3584644 | 304.9.1.59 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › CEBP_ZZ | 0.58 | 40.0 | 3.40e-01 | 73.0% | 51.8% |
| 3726808 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.58 | 55.0 | 3.81e-01 | 100.0% | 35.0% |
| 3935927 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.58 | 52.0 | 3.17e-01 | 100.0% | 16.2% |
| 4011414 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.57 | 51.0 | 3.47e-01 | 100.0% | 28.8% |
| 3988581 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 49.0 | 4.37e-01 | 100.0% | 66.7% |
| 3483425 | 3745.1.1.0 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger | 0.56 | 47.0 | 2.90e-01 | 100.0% | 57.7% |
| 5000514 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.56 | 40.0 | 3.59e-01 | 98.4% | 54.5% |
| 184678 | 6041.1.1.1 ↗ | a+b two layers › DUF1107-like › DUF1107-like › DUF1107-like › DUF1107 | 0.55 | 41.0 | 3.86e-01 | 100.0% | 66.2% |
| 4022035 | 609.1.1.0 ↗ | alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase | 0.55 | 47.0 | 4.01e-01 | 100.0% | 67.3% |
| 3630011 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.55 | 47.0 | 3.42e-01 | 100.0% | 43.2% |
| None | — | 0.54 | 45.0 | 2.82e-01 | 100.0% | 58.6% | |
| 3284992 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 42.0 | 3.78e-01 | 100.0% | 60.2% |
| 3650594 | 304.8.1.47 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd | 0.54 | 40.0 | 2.89e-01 | 79.4% | 63.9% |
| 3985268 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.54 | 47.0 | 3.12e-01 | 100.0% | 24.3% |
| 3498627 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.54 | 50.0 | 3.22e-01 | 100.0% | 25.1% |
| 3205024 | 109.4.1.1715 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TANGO6 | 0.53 | 45.0 | 2.84e-01 | 100.0% | 17.7% |
| 3500240 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 38.0 | 3.18e-01 | 76.2% | 82.7% |
| 3541 | 4107.1.1.1 ↗ | alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR | 0.53 | 47.0 | 3.32e-01 | 100.0% | 33.7% |
| 3639694 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 44.0 | 2.78e-01 | 100.0% | 17.4% |
| 3789276 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.52 | 43.0 | 3.76e-01 | 100.0% | 58.2% |
| 3216556 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 39.0 | 2.98e-01 | 98.4% | 32.7% |
| 3939311 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.52 | 44.0 | 3.79e-01 | 100.0% | 58.2% |
| 5046934 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.52 | 37.0 | 2.94e-01 | 90.5% | 36.9% |
| 3775826 | 4016.1.1.0 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase | 0.52 | 48.0 | 3.56e-01 | 100.0% | 44.1% |
| 4251053 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.52 | 48.0 | 3.08e-01 | 100.0% | 25.1% |
| 3538512 | 3892.1.1.0 ↗ | alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II | 0.51 | 47.0 | 3.44e-01 | 100.0% | 40.0% |
| 4115648 | 3671.1.1.1 ↗ | alpha duplicates or obligate multimers › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Tir_receptor_M | 0.51 | 40.0 | 3.66e-01 | 92.1% | 63.5% |
| 4965179 | 5040.1.1.0 ↗ | extended segments › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region | 0.51 | 40.0 | 3.87e-01 | 100.0% | 74.7% |
| 3467284 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.51 | 39.0 | 3.27e-01 | 82.5% | 94.4% |
| 2033706 | 7592.1.1.5 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csx1_CARF | 0.51 | 42.0 | 2.76e-01 | 98.4% | 46.4% |
| 3924514 | 109.4.1.83 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf | 0.50 | 33.0 | 2.22e-01 | 96.8% | 14.8% |
| 3603146 | 2008.1.1.95 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII | 0.50 | 39.0 | 2.57e-01 | 85.7% | 27.0% |
| 3724974 | 101.1.2.519 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7791 | 0.50 | 44.0 | 3.20e-01 | 100.0% | 80.0% |
| 3799886 | 304.8.1.49 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 | 0.50 | 37.0 | 3.64e-01 | 96.8% | 72.9% |