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NC_009819.1__YP_001469194.1__P9_gp14__00014

Bact-Vir

NC_009819.1__YP_001469194.1__P9_gp14__00014

Identity

Accession:
NC_009819 ↗
Kingdom:
phage

Quality

76.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_P9

TaxID: 403905

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-77
PDB
Domain cluster: rep: hypothetical_protein_MpV1_138c__YP_004062021__Micromonas_sp._RCC1109_virus_MpV1__880161__D120-190
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10991.16 best Enc34_ssDNA-bd 80.9 1.20e-22 100.0% 34.9%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jg2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.91 85.0 5.86e-01 100.0% 34.1%
1je5A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 71.0 5.09e-01 98.4% 42.5%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 56.0 4.00e-01 95.2% 39.9%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 45.0 3.91e-01 93.7% 46.6%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 45.0 3.43e-01 93.7% 31.0%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 47.0 4.00e-01 95.2% 49.1%
2i46A00 2.40.50.960 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 50.0 3.89e-01 100.0% 42.8%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.49e-01 81.0% 93.2%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.67e-01 96.8% 28.6%
7s7rA01 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.13e-01 85.7% 85.0%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 41.0 2.90e-01 96.8% 93.8%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 39.0 2.88e-01 90.5% 96.1%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 39.0 3.03e-01 87.3% 49.3%
6xw5A01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.50 42.0 3.18e-01 100.0% 78.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
235847 2.1.1.53 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Enc34_ssDNA-bd 0.91 85.0 5.96e-01 100.0% 36.4%
2132736 2.1.1.53 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Enc34_ssDNA-bd 0.89 82.0 5.77e-01 100.0% 37.4%
379 2.1.1.108 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SBB_T7 0.81 71.0 5.09e-01 98.4% 42.5%
3488538 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 46.0 3.69e-01 93.7% 36.9%
3590404 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 50.0 4.30e-01 96.8% 54.3%
3278700 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 52.0 3.87e-01 98.4% 58.7%
3602563 2007.1.5.14 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › PF27247 0.56 44.0 3.65e-01 90.5% 93.6%
3695037 243.1.1.95 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26528 0.55 45.0 3.48e-01 96.8% 90.6%
4189845 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.54 39.0 2.76e-01 79.4% 30.9%
3784046 59.1.2.1 ↗ beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC 0.53 46.0 3.60e-01 98.4% 97.8%
5035417 3010.1.1.0 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.52 30.0 2.61e-01 71.4% 33.7%
3912477 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.52 41.0 2.66e-01 88.9% 56.6%
10062 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.51 41.0 2.88e-01 96.8% 93.5%
4299557 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 44.0 3.14e-01 100.0% 73.3%