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NC_009904.1__YP_001504259.1__EFP_gp150__00150

Bact-Vir

NC_009904.1__YP_001504259.1__EFP_gp150__00150

Identity

Accession:
NC_009904 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Kochikohdavirus› Enterococcus_phage_EF24C

TaxID: 442493

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-111
PDB
Domain cluster: rep: OR576727.1__WNM70195.1__X__00102__D1-104
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 41.0 4.89e-01 76.6% 82.8%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 42.0 4.73e-01 78.7% 75.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 41.0 5.18e-01 76.6% 96.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 47.0 4.75e-01 87.2% 66.7%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 42.0 3.82e-01 77.7% 46.4%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 39.0 4.72e-01 76.6% 90.0%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 41.0 4.08e-01 80.9% 59.4%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 41.0 4.89e-01 77.7% 98.3%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.65 38.0 3.69e-01 77.7% 52.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 39.0 4.29e-01 74.5% 73.4%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.64 47.0 3.63e-01 77.7% 39.3%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.63 47.0 3.71e-01 77.7% 44.9%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 43.0 4.28e-01 77.7% 68.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 38.0 4.40e-01 77.7% 87.9%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 4.29e-01 79.8% 74.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.61 40.0 4.63e-01 77.7% 95.5%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 42.0 4.09e-01 80.9% 66.3%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.59 39.0 3.90e-01 80.9% 65.3%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.58 43.0 4.36e-01 78.7% 100.0%
1bakA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 4.00e-01 78.7% 66.4%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 47.0 4.05e-01 90.4% 81.2%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 46.0 3.99e-01 90.4% 87.6%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.57 40.0 3.17e-01 77.7% 35.6%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 40.0 3.61e-01 72.3% 82.0%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 34.0 4.09e-01 72.3% 95.0%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.63e-01 79.8% 71.8%
3brnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 4.04e-01 94.7% 83.1%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 34.0 4.05e-01 72.3% 96.7%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.55 41.0 4.23e-01 79.8% 94.4%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.55 28.0 3.25e-01 77.7% 68.8%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.54 40.0 4.05e-01 78.7% 100.0%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.76e-01 80.9% 65.8%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.52 41.0 3.94e-01 84.0% 88.1%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.52 39.0 4.03e-01 81.9% 94.3%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.22e-01 72.3% 75.2%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 44.0 3.39e-01 94.7% 83.6%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.69e-01 79.8% 82.0%
1olrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.51 36.0 2.78e-01 74.5% 59.2%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 3.27e-01 80.9% 53.2%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.80 51.0 6.24e-01 78.7% 100.0%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.80 50.0 6.05e-01 77.7% 98.3%
3616007 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.79 46.0 5.88e-01 75.5% 100.0%
3222051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 44.0 5.28e-01 79.8% 83.1%
3927363 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 38.0 4.95e-01 71.3% 96.0%
3393319 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 42.0 4.02e-01 78.7% 51.8%
3893808 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.69 50.0 3.40e-01 86.2% 22.2%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 44.0 5.13e-01 78.7% 96.9%
4584943 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 42.0 4.77e-01 77.7% 85.7%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 42.0 4.91e-01 77.7% 92.3%
3974181 1.1.5.88 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 0.66 42.0 4.34e-01 80.9% 67.8%
1503651 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 42.0 4.49e-01 77.7% 75.0%
4261362 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 41.0 4.75e-01 77.7% 87.1%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 41.0 4.57e-01 77.7% 82.2%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 41.0 4.51e-01 77.7% 80.0%
4226934 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 41.0 4.80e-01 76.6% 92.3%
4286562 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 40.0 4.78e-01 77.7% 92.3%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 41.0 4.85e-01 77.7% 93.8%
4084850 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 40.0 4.73e-01 77.7% 92.3%
3598734 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 40.0 2.99e-01 80.9% 25.5%
4124780 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 41.0 4.56e-01 77.7% 83.6%
4995699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 43.0 4.87e-01 81.9% 92.9%
4216845 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 41.0 4.55e-01 77.7% 83.6%
3357709 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 47.0 4.98e-01 78.7% 87.1%
4974211 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.63 39.0 4.76e-01 77.7% 98.3%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.63 45.0 4.79e-01 77.7% 87.5%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.81e-01 86.2% 94.3%
5033242 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.62 41.0 4.35e-01 80.9% 75.3%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 40.0 4.48e-01 77.7% 85.1%
4429329 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 38.0 4.48e-01 77.7% 92.3%
3342793 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 51.0 4.03e-01 90.4% 84.2%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 39.0 4.48e-01 77.7% 89.9%
4347922 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 38.0 4.59e-01 77.7% 100.0%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 40.0 4.54e-01 78.7% 91.4%
3342814 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 45.0 4.53e-01 78.7% 85.3%
4252954 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 40.0 4.56e-01 78.7% 92.9%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 40.0 4.51e-01 78.7% 92.8%
3981111 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.59 44.0 3.63e-01 76.6% 49.7%
4943876 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.59 40.0 4.03e-01 80.9% 68.4%
4248855 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 39.0 4.30e-01 77.7% 85.1%
4088209 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 38.0 4.42e-01 77.7% 95.4%
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 34.0 4.17e-01 73.4% 96.4%
5065841 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.59 40.0 4.20e-01 80.9% 77.4%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 38.0 4.46e-01 78.7% 96.9%
3834112 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 42.0 4.56e-01 75.5% 97.5%
4299932 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 37.0 4.33e-01 77.7% 95.4%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 37.0 4.14e-01 77.7% 87.1%
3615787 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.57 40.0 3.02e-01 73.4% 32.9%
3704886 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.57 40.0 2.55e-01 73.4% 35.9%
4977702 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.56 39.0 4.06e-01 80.9% 77.6%
4885908 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.56 39.0 3.87e-01 80.9% 68.4%
4069793 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 37.0 4.14e-01 78.7% 90.0%
4018312 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.55 46.0 3.61e-01 91.5% 99.5%
4162968 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 41.0 4.44e-01 77.7% 92.4%
3512363 3794.1.1.1 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.55 45.0 3.93e-01 89.4% 74.5%
5065350 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 37.0 3.51e-01 89.4% 55.0%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.55 41.0 4.26e-01 77.7% 85.9%
3279724 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.53 42.0 3.85e-01 88.3% 80.0%
3282190 3794.1.1.2 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.53 42.0 3.92e-01 89.4% 79.2%
3515143 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.51 46.0 4.20e-01 97.9% 99.2%
3710489 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.51 38.0 3.71e-01 88.3% 70.5%
4139943 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.51 42.0 3.66e-01 94.7% 93.5%
5053431 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.50 39.0 3.28e-01 81.9% 71.6%