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NC_009993.2__YP_001552372.1__Giles_43__00043

Bact-Vir

NC_009993.2__YP_001552372.1__Giles_43__00043

Identity

Accession:
NC_009993 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-70
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.65 44.0 3.97e-01 70.0% 51.8%
3vrdB03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.64 45.0 4.26e-01 75.0% 75.7%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 57.0 4.17e-01 100.0% 79.5%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.64 45.0 4.26e-01 75.0% 68.1%
4h61A00 3.10.450.580 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 0.63 42.0 3.25e-01 85.0% 30.7%
3p9xA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.62 55.0 3.84e-01 100.0% 36.9%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.33e-01 100.0% 87.3%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.60 38.0 3.73e-01 71.7% 59.4%
3bvxA05 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 41.0 3.59e-01 73.3% 90.6%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.60 44.0 3.80e-01 88.3% 49.5%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.59 50.0 3.84e-01 98.3% 63.9%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 53.0 4.17e-01 100.0% 71.5%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 40.0 2.63e-01 73.3% 82.8%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 48.0 3.97e-01 100.0% 96.6%
6bjqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 50.0 4.41e-01 100.0% 83.0%
3a2eA00 3.30.430.20 Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif 0.56 44.0 3.76e-01 100.0% 50.0%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 38.0 3.30e-01 71.7% 47.1%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.56 46.0 4.06e-01 100.0% 59.2%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.55 42.0 3.27e-01 90.0% 62.0%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.55 39.0 3.31e-01 96.7% 44.2%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.55 41.0 3.08e-01 86.7% 57.5%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.40e-01 95.0% 52.2%
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.55 45.0 3.68e-01 100.0% 47.7%
4p7aA02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.55 40.0 3.46e-01 95.0% 49.5%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 45.0 3.70e-01 100.0% 78.1%
2qm0A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 43.0 2.88e-01 98.3% 21.2%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.54 44.0 3.75e-01 95.0% 52.8%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.53 43.0 2.91e-01 100.0% 22.6%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 37.0 2.92e-01 78.3% 32.8%
3oc4B03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 45.0 3.57e-01 95.0% 69.4%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.53 40.0 3.04e-01 85.0% 39.7%
2gcuA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 44.0 2.97e-01 96.7% 45.6%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 43.0 3.63e-01 100.0% 57.5%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 43.0 3.10e-01 100.0% 47.3%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 42.0 3.61e-01 100.0% 81.8%
1w7cA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.53e-01 96.7% 63.5%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.94e-01 100.0% 89.7%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.60e-01 100.0% 55.9%
2bvfA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.51 39.0 2.77e-01 86.7% 46.7%
1rxtC02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 42.0 3.05e-01 98.3% 53.9%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 35.0 3.65e-01 85.0% 80.7%
4efzB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 45.0 2.86e-01 98.3% 54.0%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 2.79e-01 100.0% 48.7%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960795 706.2.1.0 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G 0.73 49.0 5.54e-01 73.3% 93.3%
3819309 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.71 60.0 5.48e-01 100.0% 74.1%
3808123 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.66 55.0 4.26e-01 100.0% 41.8%
3600840 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 57.0 4.86e-01 100.0% 80.0%
3244569 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 55.0 5.03e-01 100.0% 75.3%
5049138 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 57.0 4.44e-01 100.0% 44.4%
3219495 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.65 56.0 4.18e-01 100.0% 37.5%
3291496 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.65 47.0 3.12e-01 78.3% 92.0%
4408649 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.64 57.0 3.85e-01 100.0% 39.6%
3599949 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 52.0 4.52e-01 100.0% 57.9%
3916200 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 56.0 3.32e-01 100.0% 14.1%
3574420 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 56.0 4.11e-01 100.0% 38.1%
5053150 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 55.0 4.11e-01 100.0% 89.7%
3384583 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.63 50.0 3.00e-01 86.7% 20.0%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.62 50.0 4.31e-01 98.3% 65.5%
4978995 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 44.0 2.95e-01 76.7% 31.0%
3419015 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 42.0 4.48e-01 71.7% 84.0%
4944741 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 54.0 4.14e-01 100.0% 42.9%
3611338 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 54.0 4.26e-01 100.0% 64.0%
3659556 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.61 41.0 4.64e-01 73.3% 93.3%
3774553 223.2.1.22 a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.61 54.0 3.51e-01 100.0% 23.8%
3938634 2484.1.1.50 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.60 49.0 3.01e-01 96.7% 14.7%
3625217 223.2.1.37 a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.60 52.0 3.65e-01 100.0% 31.5%
3422338 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.60 52.0 4.51e-01 100.0% 89.5%
3600290 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.59 52.0 2.85e-01 98.3% 6.7%
3914552 192.18.1.0 alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.59 49.0 2.95e-01 100.0% 13.3%
3301984 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 41.0 4.24e-01 73.3% 81.8%
4441646 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.58 45.0 3.30e-01 88.3% 83.2%
3253855 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.58 47.0 4.27e-01 95.0% 80.0%
3673071 7516.1.1.16 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_43 0.58 44.0 2.97e-01 86.7% 20.8%
3241603 223.2.1.37 a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.58 48.0 3.63e-01 100.0% 41.2%
3998954 223.2.1.37 a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.57 48.0 3.86e-01 100.0% 57.7%
4969719 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.57 48.0 3.66e-01 96.7% 39.3%
4979396 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.57 40.0 3.10e-01 81.7% 31.0%
3477604 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 47.0 3.51e-01 95.0% 47.5%
5052575 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 47.0 3.48e-01 100.0% 38.3%
3514909 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 47.0 3.10e-01 100.0% 24.1%
5040130 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 49.0 4.27e-01 96.7% 76.7%
5055689 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 39.0 3.71e-01 73.3% 58.7%
5047099 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 39.0 2.75e-01 73.3% 22.5%
3937193 223.2.1.37 a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.56 46.0 3.44e-01 100.0% 38.9%
4943853 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 46.0 3.61e-01 100.0% 48.3%
3990413 2.1.1.141 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.55 46.0 4.42e-01 98.3% 84.3%
5031616 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.55 36.0 3.77e-01 71.7% 74.5%
165197 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 45.0 3.68e-01 100.0% 47.7%
3577516 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.54 43.0 2.92e-01 90.0% 44.4%
3498392 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.69e-01 95.0% 61.3%
3967619 244.3.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.54 45.0 3.73e-01 100.0% 67.5%
3347388 11.1.1.977 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7579 0.54 47.0 3.73e-01 100.0% 76.0%
4964696 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.54 43.0 3.49e-01 100.0% 45.2%
3744012 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.53 45.0 2.84e-01 98.3% 21.1%
4944821 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 41.0 4.18e-01 88.3% 86.7%
1687158 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.53 41.0 3.08e-01 88.3% 55.6%
4982545 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 39.0 3.62e-01 91.7% 60.7%
4945033 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 37.0 2.95e-01 83.3% 34.6%
4464656 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.53 43.0 2.93e-01 100.0% 23.3%
3520733 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.53 40.0 2.52e-01 85.0% 28.4%
3869953 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.73e-01 96.7% 18.7%
4606510 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.52 42.0 3.81e-01 93.3% 64.7%
3426315 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 36.0 3.24e-01 73.3% 48.9%
3517405 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 43.0 4.11e-01 96.7% 87.1%
3724785 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.52 42.0 3.03e-01 93.3% 48.9%
3716709 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 43.0 3.53e-01 100.0% 77.2%
4797813 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.51 35.0 3.65e-01 85.0% 80.7%
4303165 5087.1.1.0 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.51 43.0 3.05e-01 98.3% 35.5%