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NC_009993.2__YP_001552385.1__Giles_56__00056

Bact-Vir

NC_009993.2__YP_001552385.1__Giles_56__00056

Identity

Accession:
NC_009993 ↗
Kingdom:
phage

Quality

66.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-66
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xsgB00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.70 58.0 3.92e-01 92.6% 30.2%
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.69 57.0 3.88e-01 94.4% 30.0%
4fk7A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.68 57.0 3.84e-01 94.4% 28.6%
1yqyA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.68 57.0 3.84e-01 94.4% 26.0%
1e9gB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.67 49.0 3.11e-01 96.3% 15.2%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.67 55.0 3.81e-01 94.4% 29.9%
5wrtB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.67 49.0 3.23e-01 96.3% 18.5%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.66 55.0 3.75e-01 94.4% 29.7%
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.65 55.0 3.70e-01 96.3% 26.8%
2j3xA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.65 54.0 3.66e-01 96.3% 25.7%
5teaB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.65 47.0 3.35e-01 96.3% 24.7%
2wn5A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.64 55.0 3.79e-01 98.1% 28.9%
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.62 53.0 3.63e-01 98.1% 28.5%
3lw6A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.62 54.0 3.54e-01 100.0% 81.7%
3hhjB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 52.0 4.01e-01 100.0% 67.9%
1v8wA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 52.0 3.80e-01 100.0% 55.2%
3eesA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 52.0 3.95e-01 100.0% 65.6%
2b0vA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 50.0 3.73e-01 100.0% 58.8%
3exqA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 51.0 3.79e-01 100.0% 61.8%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 47.0 3.82e-01 100.0% 45.0%
4dywA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 50.0 3.88e-01 100.0% 67.4%
3a6sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 51.0 3.91e-01 100.0% 66.4%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 42.0 3.56e-01 83.3% 67.6%
6u7tA03 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 50.0 3.86e-01 100.0% 66.9%
1k2eA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 49.0 3.60e-01 100.0% 65.8%
5zliA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.57 48.0 3.94e-01 100.0% 73.6%
4ebjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 41.0 3.19e-01 100.0% 33.6%
3gwyB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 48.0 3.69e-01 100.0% 65.4%
3gz8C01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 47.0 3.63e-01 100.0% 68.4%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 3.88e-01 100.0% 53.8%
2fkbC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 48.0 3.45e-01 100.0% 53.3%
1x51A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 46.0 3.50e-01 100.0% 66.4%
4lubB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 41.0 3.40e-01 83.3% 92.0%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 45.0 3.47e-01 100.0% 63.0%
3i9xA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 45.0 3.35e-01 100.0% 65.6%
5lddC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.27e-01 100.0% 60.1%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 42.0 3.32e-01 100.0% 62.6%
5cfjA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 43.0 3.27e-01 96.3% 65.0%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.52 43.0 3.25e-01 94.4% 64.0%
3rh7A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 43.0 3.37e-01 100.0% 58.1%
2vg9A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 40.0 2.77e-01 92.6% 84.3%
2x8xX01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 43.0 3.84e-01 92.6% 86.8%
2j4xA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 3.70e-01 100.0% 68.1%
1ktgA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 42.0 3.23e-01 96.3% 65.0%
1d5cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 46.0 3.25e-01 100.0% 59.9%
1yu9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.17e-01 100.0% 40.1%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.16e-01 100.0% 40.7%
3h95A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 44.0 3.35e-01 100.0% 61.8%
3wgtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 41.0 2.78e-01 94.4% 24.7%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004416 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 57.0 4.60e-01 100.0% 46.7%
7439 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.69 57.0 3.87e-01 94.4% 29.8%
4294371 237.1.1.14 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Anthrax-tox_M 0.68 58.0 3.66e-01 96.3% 18.3%
2770556 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.67 56.0 3.77e-01 94.4% 25.8%
7440 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.67 55.0 3.81e-01 94.4% 29.9%
4535633 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 50.0 4.58e-01 98.1% 60.0%
2034328 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.66 55.0 3.69e-01 94.4% 26.5%
308110 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.65 53.0 3.61e-01 94.4% 25.9%
3963831 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.65 58.0 4.30e-01 100.0% 65.9%
3494598 7516.1.1.13 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_7C,Glyco_transf_7N 0.64 57.0 3.65e-01 100.0% 85.4%
3987874 375.1.1.253 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.64 53.0 4.73e-01 96.3% 65.3%
3926921 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 55.0 3.87e-01 100.0% 49.4%
3227724 7516.1.1.13 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_7C,Glyco_transf_7N 0.63 56.0 3.55e-01 100.0% 68.2%
3947390 2.5.1.1 beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase 0.63 48.0 3.42e-01 96.3% 27.3%
3503674 7516.1.1.13 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_7C,Glyco_transf_7N 0.63 55.0 3.54e-01 100.0% 71.9%
143236 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.62 54.0 4.08e-01 100.0% 67.9%
359529 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.62 53.0 4.09e-01 100.0% 62.5%
4031313 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.61 53.0 4.14e-01 100.0% 67.5%
3947875 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.60 53.0 4.00e-01 100.0% 66.9%
3975388 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.60 52.0 3.93e-01 100.0% 62.3%
4991736 239.4.1.1 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N 0.60 50.0 4.16e-01 96.3% 76.0%
5058171 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.60 52.0 3.97e-01 100.0% 66.7%
3264285 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.60 53.0 3.82e-01 100.0% 72.3%
3886084 237.1.1.2 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART 0.60 52.0 3.43e-01 98.1% 25.8%
3978281 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.60 52.0 3.96e-01 100.0% 66.9%
5053953 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.59 51.0 3.82e-01 100.0% 66.4%
3272028 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.59 50.0 3.80e-01 96.3% 66.9%
4156752 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.59 50.0 3.55e-01 98.1% 56.0%
149351 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.59 50.0 3.88e-01 100.0% 67.4%
3966822 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 51.0 3.66e-01 100.0% 51.3%
4954158 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 50.0 3.86e-01 100.0% 68.2%
5024576 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 50.0 3.74e-01 100.0% 63.4%
3947895 4.26.1.4 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › zf-IS66 0.58 46.0 4.30e-01 96.3% 68.6%
4514613 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 47.0 3.34e-01 94.4% 47.8%
3977403 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.57 51.0 3.86e-01 100.0% 64.8%
2032529 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.57 48.0 3.72e-01 100.0% 66.2%
5030096 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 49.0 3.54e-01 100.0% 56.4%
2557339 239.4.1.1 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N 0.56 45.0 3.79e-01 98.1% 72.2%
4942594 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.55 47.0 3.74e-01 100.0% 69.2%
4009092 2.1.1.139 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Slp 0.55 44.0 3.47e-01 100.0% 40.8%
5038971 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.54 46.0 3.68e-01 100.0% 68.1%
3491593 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 3.61e-01 100.0% 51.3%
3587077 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.54 46.0 3.43e-01 100.0% 70.7%
3196372 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 45.0 3.21e-01 98.1% 60.6%
5014602 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.53 44.0 3.48e-01 100.0% 97.7%
1124600 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 45.0 3.41e-01 98.1% 65.5%
3543181 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.53 44.0 3.42e-01 100.0% 41.6%
3989066 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.53 43.0 3.28e-01 100.0% 68.7%
3485986 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 46.0 2.98e-01 100.0% 40.0%
4185820 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.52 45.0 3.52e-01 100.0% 64.0%
5058061 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 43.0 3.32e-01 100.0% 66.9%
4013718 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 44.0 3.08e-01 94.4% 66.9%
5050772 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 46.0 3.33e-01 100.0% 44.7%
3673852 2004.1.1.548 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras, Roc 0.52 46.0 2.99e-01 100.0% 48.1%
3542662 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 45.0 3.05e-01 100.0% 33.0%
3666379 2004.1.1.548 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras, Roc 0.51 44.0 2.97e-01 100.0% 52.6%
3798529 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 45.0 2.96e-01 100.0% 28.6%
3485176 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 44.0 3.02e-01 100.0% 49.2%
3505905 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 35.0 3.62e-01 96.3% 86.0%
3489401 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.50 42.0 3.59e-01 100.0% 56.8%