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NC_009993.2__YP_001552400.1__Giles_71__00071

Bact-Vir

NC_009993.2__YP_001552400.1__Giles_71__00071

Identity

Accession:
NC_009993 ↗
Kingdom:
phage

Quality

92.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gilesvirus› Mycobacterium_phage_Giles

TaxID: 480808

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-127
PDB
Domain cluster: rep: OQ417976.1__WJJ56743.1__PROPHIT461_35__00035__D7-115_120-133
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.67 43.0 4.32e-01 84.6% 63.2%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.67 45.0 4.75e-01 86.2% 76.6%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 48.0 5.16e-01 87.8% 88.8%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 45.0 4.35e-01 72.4% 86.1%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 40.0 4.58e-01 82.1% 85.9%
4eqmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 38.0 4.48e-01 82.1% 84.3%
6v6aC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 38.0 4.48e-01 81.3% 86.9%
3licA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 36.0 4.23e-01 88.6% 80.5%
4myjA05 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 37.0 4.27e-01 81.3% 81.8%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 48.0 4.12e-01 84.6% 63.5%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.59 44.0 4.93e-01 78.0% 100.0%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.59 38.0 4.17e-01 73.2% 80.0%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 35.0 3.63e-01 82.9% 61.5%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.56 39.0 4.12e-01 72.4% 81.7%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 28.0 2.94e-01 71.5% 50.9%
2yg3A02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.53 35.0 3.23e-01 77.2% 50.0%
3co8A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.52 39.0 3.68e-01 82.1% 64.2%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.51 36.0 3.50e-01 70.7% 90.2%
2olgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 40.0 4.14e-01 83.7% 89.6%
4lq0A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 35.0 3.29e-01 79.7% 58.5%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.50 37.0 3.25e-01 78.0% 54.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4141852 1.1.13.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.69 47.0 5.49e-01 79.7% 100.0%
5082328 1.1.13.77 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join_3 0.65 49.0 5.46e-01 78.0% 100.0%
3428387 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 43.0 3.79e-01 82.9% 46.7%
3420315 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.63 42.0 3.61e-01 82.9% 42.0%
4300310 3016.1.1.11 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA 0.61 37.0 3.99e-01 86.2% 70.2%
1082176 3016.1.1.11 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA 0.61 37.0 3.88e-01 86.2% 65.2%
3184103 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.61 47.0 3.73e-01 94.3% 39.5%
4534145 3016.1.1.11 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA 0.60 38.0 4.01e-01 87.0% 70.0%
4988102 1.1.13.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.60 48.0 5.03e-01 84.6% 100.0%
3417330 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.60 44.0 3.70e-01 100.0% 44.7%
4224443 1.1.5.44 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head 0.60 45.0 4.18e-01 80.5% 90.0%
3997100 60.1.1.0 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain 0.57 47.0 4.69e-01 90.2% 95.4%
3881484 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 44.0 4.21e-01 84.6% 99.3%
3281834 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 35.0 3.41e-01 70.7% 71.4%