←Back to structures

YP_001604160.1

Arc-Vir

NC_010152__YP_001604160.1__AFV6-gp02__00002

Identity

Accession:
NC_010152 ↗
Protein ID:
YP_001604160.1 ↗
Kingdom:
archaea

Quality

92.2 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Betalipothrixvirus› Betalipothrixvirus_pozzuoliense

TaxID: 346882

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-75
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.73 43.0 4.30e-01 94.5% 55.8%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.73 44.0 4.03e-01 94.5% 46.9%
4nkpA01 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.69 47.0 3.94e-01 71.2% 98.5%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.65 42.0 3.43e-01 100.0% 36.1%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.64 37.0 3.35e-01 100.0% 41.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 51.0 3.92e-01 87.7% 95.2%
4lrzE01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 44.0 3.33e-01 72.6% 77.5%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 46.0 3.73e-01 80.8% 82.2%
7k98B04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 48.0 3.52e-01 89.0% 71.7%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 44.0 3.85e-01 100.0% 54.3%
4u9cA01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.59 50.0 4.31e-01 100.0% 89.5%
4atnA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 45.0 3.43e-01 84.9% 90.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 46.0 4.27e-01 89.0% 96.8%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.58 47.0 4.92e-01 100.0% 94.0%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.57 44.0 3.92e-01 87.7% 72.6%
3cwfA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 46.0 3.99e-01 100.0% 58.3%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 47.0 4.82e-01 95.9% 100.0%
3fpwA01 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.55 51.0 4.20e-01 100.0% 68.0%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 47.0 3.94e-01 100.0% 55.8%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.41e-01 100.0% 47.5%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 50.0 4.02e-01 100.0% 56.3%
6bwsB00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.54 50.0 3.99e-01 100.0% 65.7%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 47.0 3.91e-01 100.0% 56.2%
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.54 44.0 4.22e-01 90.4% 76.7%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.54 42.0 4.03e-01 84.9% 89.2%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 46.0 3.60e-01 93.2% 67.8%
2a2lC00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.53 49.0 3.87e-01 100.0% 62.9%
3d3lA02 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.50e-01 71.2% 81.2%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 48.0 4.04e-01 100.0% 67.5%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 47.0 4.10e-01 100.0% 67.0%
5ereA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 47.0 3.87e-01 100.0% 60.9%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 47.0 3.69e-01 100.0% 55.1%
6u26A01 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.52 42.0 4.04e-01 91.8% 93.2%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 46.0 3.67e-01 100.0% 53.8%
3fedA02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.51 44.0 3.20e-01 100.0% 97.7%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 47.0 3.78e-01 100.0% 56.7%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.50 45.0 4.34e-01 100.0% 91.8%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 40.0 3.72e-01 90.4% 76.8%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945021 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 60.0 5.30e-01 100.0% 69.1%
4943133 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.44e-01 72.6% 98.5%
4943458 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.45e-01 74.0% 96.9%
4440297 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 41.0 3.36e-01 74.0% 92.1%
4978622 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 48.0 4.24e-01 100.0% 65.0%
4994595 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 39.0 3.29e-01 74.0% 96.3%
5065216 223.7.1.0 ↗ a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like 0.57 45.0 4.11e-01 100.0% 65.3%
3927766 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.56 48.0 3.74e-01 100.0% 45.5%
3611337 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 3.25e-01 75.3% 97.9%
4028834 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.55 47.0 3.96e-01 100.0% 55.8%
3724976 223.6.1.1 ↗ a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.54 50.0 3.89e-01 100.0% 60.7%
4944138 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 45.0 3.96e-01 100.0% 61.9%
5072371 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 49.0 4.41e-01 100.0% 72.0%
5053597 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 50.0 3.94e-01 100.0% 56.4%
3593295 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 47.0 4.01e-01 100.0% 61.8%
3425254 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 50.0 3.97e-01 100.0% 88.9%
5001593 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 49.0 3.91e-01 100.0% 65.7%
5001318 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 46.0 3.95e-01 100.0% 60.9%
3741860 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.53 46.0 3.75e-01 100.0% 52.3%
4028560 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.53 48.0 3.85e-01 100.0% 61.5%
5051614 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 47.0 3.93e-01 100.0% 56.8%
4976020 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 49.0 3.89e-01 100.0% 52.1%
4979823 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 48.0 4.29e-01 100.0% 72.0%
4943690 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 49.0 3.83e-01 100.0% 51.0%
3299766 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 49.0 3.67e-01 100.0% 56.4%
5024071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 45.0 3.79e-01 100.0% 57.4%
3313678 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 48.0 3.80e-01 100.0% 51.4%
4944923 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 49.0 3.95e-01 100.0% 56.2%
4945318 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 48.0 4.06e-01 100.0% 62.6%
3508716 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.53 47.0 3.75e-01 100.0% 51.9%
3223489 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.52 46.0 3.75e-01 100.0% 53.1%
5046979 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 3.97e-01 100.0% 62.7%
5053192 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 48.0 3.86e-01 100.0% 61.2%
3491036 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.52 46.0 4.31e-01 100.0% 77.5%
5049782 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 48.0 3.87e-01 100.0% 56.3%
4998154 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 49.0 3.89e-01 100.0% 58.5%
3704542 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.52 48.0 3.70e-01 100.0% 53.5%
3646599 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.52 47.0 3.77e-01 100.0% 51.4%
5052689 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 48.0 3.97e-01 100.0% 61.6%
3390111 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.52 47.0 4.32e-01 100.0% 77.8%
5077119 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 47.0 3.68e-01 100.0% 48.0%
4943309 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 48.0 4.06e-01 100.0% 65.8%
3482975 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.52 45.0 3.69e-01 100.0% 54.4%
3783719 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.65e-01 100.0% 55.8%
3787551 223.2.1.17 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SLM4 0.51 47.0 3.56e-01 100.0% 58.2%
4930086 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 46.0 3.92e-01 100.0% 64.7%
4944328 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 47.0 3.84e-01 100.0% 56.9%
4946284 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 47.0 3.89e-01 100.0% 60.0%
5071005 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 46.0 3.75e-01 100.0% 55.4%
5083496 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 46.0 3.83e-01 100.0% 60.8%
5049326 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 46.0 3.82e-01 100.0% 64.0%
3927907 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.50 44.0 4.15e-01 100.0% 80.0%