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YP_001604180.1

Arc-Vir

NC_010152__YP_001604180.1__AFV6-gp22__00022

Identity

Accession:
NC_010152 ↗
Protein ID:
YP_001604180.1 ↗
Kingdom:
archaea

Quality

84.1 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Betalipothrixvirus› Betalipothrixvirus_pozzuoliense

TaxID: 346882

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-88
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5lbmA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.89 78.0 6.97e-01 95.1% 74.7%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.83 70.0 7.04e-01 91.8% 98.4%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.83 75.0 7.11e-01 100.0% 85.9%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.82 72.0 6.38e-01 98.4% 84.1%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.80 72.0 6.28e-01 100.0% 71.4%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.80 57.0 6.17e-01 75.4% 94.1%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 70.0 6.59e-01 98.4% 82.2%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.79 56.0 4.96e-01 75.4% 56.3%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.78 61.0 5.69e-01 83.6% 70.3%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.77 53.0 5.91e-01 72.1% 100.0%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.77 53.0 5.72e-01 73.8% 91.7%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 61.0 6.09e-01 86.9% 85.5%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.76 65.0 5.68e-01 98.4% 63.9%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 66.0 5.58e-01 96.7% 63.3%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.75 59.0 5.14e-01 85.2% 61.5%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.75 64.0 4.43e-01 100.0% 28.0%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 63.0 6.00e-01 98.4% 79.2%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 62.0 5.84e-01 95.1% 81.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 58.0 5.96e-01 85.2% 91.4%
7k3zG01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.73 49.0 3.35e-01 75.4% 19.7%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.73 59.0 4.25e-01 91.8% 30.8%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 61.0 5.74e-01 100.0% 76.3%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.70 56.0 5.70e-01 90.2% 91.5%
7vevA01 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.68 49.0 3.21e-01 75.4% 89.1%
4uvmA00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.67 57.0 3.37e-01 96.7% 41.2%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.63 51.0 4.90e-01 91.8% 83.1%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 46.0 3.97e-01 85.2% 52.4%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989298 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.87 80.0 5.69e-01 100.0% 38.8%
2755018 3843.1.1.1 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.86 73.0 6.15e-01 98.4% 57.1%
3839762 1008.1.1.0 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.86 68.0 6.03e-01 85.2% 62.4%
3660125 3711.1.1.4 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 0.85 69.0 6.13e-01 86.9% 67.1%
3894917 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.84 76.0 6.00e-01 100.0% 53.3%
4179301 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.83 75.0 6.13e-01 100.0% 55.5%
3935107 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.83 76.0 6.14e-01 100.0% 86.4%
3073109 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.83 71.0 6.69e-01 95.1% 83.8%
4016635 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.83 74.0 6.24e-01 100.0% 61.0%
4012407 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.82 64.0 6.48e-01 88.5% 86.7%
3834594 601.27.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › DUF632, DUF630 0.81 73.0 5.36e-01 100.0% 52.3%
3326008 5086.1.1.96 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF632 0.81 72.0 6.10e-01 100.0% 90.0%
5053066 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.80 70.0 4.70e-01 100.0% 26.0%
3782889 4177.1.1.5 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.80 71.0 4.84e-01 100.0% 28.8%
4965632 192.7.1.85 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › DUF4349 0.80 66.0 6.48e-01 91.8% 84.6%
4024277 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.80 72.0 6.73e-01 100.0% 81.3%
3737505 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 71.0 6.64e-01 100.0% 81.3%
4247116 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.79 70.0 5.71e-01 98.4% 55.5%
5002349 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.78 67.0 6.57e-01 93.4% 87.7%
3742005 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.78 61.0 5.38e-01 85.2% 57.8%
2661265 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.78 69.0 6.28e-01 100.0% 97.6%
3550436 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.78 69.0 5.77e-01 100.0% 58.7%
3602796 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.77 59.0 4.96e-01 82.0% 54.0%
5071514 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 57.0 5.38e-01 80.3% 66.7%
3961347 150.5.1.53 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE 0.76 63.0 5.67e-01 95.1% 67.1%
2075294 3712.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.76 67.0 5.63e-01 96.7% 62.6%
3614078 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.75 66.0 5.32e-01 100.0% 50.8%
4979981 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.75 65.0 5.37e-01 98.4% 55.5%
4041347 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.75 65.0 5.38e-01 98.4% 55.5%
4528712 109.4.1.3083 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29810 0.74 65.0 4.25e-01 100.0% 27.4%
1002432 5071.3.1.1 ↗ alpha bundles › cytochrome bc1 complex 11 kDa protein-like › DUF465 › DUF465 › DUF465 0.72 61.0 5.74e-01 100.0% 76.3%
4032074 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.64 54.0 3.66e-01 96.7% 73.1%
5041347 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.55 43.0 3.12e-01 95.1% 27.4%