YP_001604237.1

Arc-Vir

NC_010153__YP_001604237.1__AFV7-gp13__00013

Identity

Accession:: NC_010153 ↗
Protein ID:: YP_001604237.1 ↗
Kingdom:: archaea

Quality

73.7 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Betalipothrixvirus› Betalipothrixvirus_pezzuloense

TaxID: 346883

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-29_67-160

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3i4hX02	3.30.70.1900	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.63	52.0	5.40e-01	98.2%	98.1%
1z2zA02	3.30.70.3160	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.60	40.0	4.30e-01	100.0%	82.2%
2raqA01	3.30.70.1340	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain	0.57	40.0	4.40e-01	100.0%	94.1%
3zxaC02	2.60.40.3420	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.57	36.0	3.67e-01	100.0%	64.2%
6wy9B02	2.40.110.10	Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2	0.56	35.0	3.76e-01	79.3%	73.7%
3rrkA03	3.30.70.2750	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.56	34.0	3.92e-01	100.0%	90.5%
3p26A03	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.54	47.0	4.74e-01	100.0%	97.3%
4x28A02	2.40.110.10	Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2	0.54	39.0	3.96e-01	76.6%	77.5%
5gj7A02	2.40.110.10	Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2	0.54	38.0	4.06e-01	77.5%	86.2%
1zunB03	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.53	44.0	4.54e-01	100.0%	97.2%
1d5aA01	3.30.342.10	Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1	0.53	37.0	3.40e-01	100.0%	53.6%
7nitA06	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.53	41.0	3.57e-01	100.0%	54.1%
2uv8A06	3.30.70.2490	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	30.0	3.52e-01	79.3%	88.1%
4x28C02	2.40.110.10	Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2	0.51	35.0	3.65e-01	75.7%	77.2%
3jqwC00	2.60.120.380	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	32.0	3.13e-01	100.0%	56.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4928785	304.158.1.2 ↗	a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d	0.70	63.0	5.02e-01	100.0%	60.0%
5022759	304.51.1.6 ↗	a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3	0.61	49.0	5.29e-01	95.5%	100.0%
3958925	4052.1.1.0 ↗	beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like	0.58	37.0	4.07e-01	75.7%	82.4%
3963160	4052.1.1.0 ↗	beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like	0.57	37.0	3.95e-01	77.5%	76.8%
4931129	304.114.1.0 ↗	a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain	0.55	39.0	4.28e-01	100.0%	95.3%
4955095	11.1.5.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f	0.54	31.0	3.40e-01	92.8%	70.6%
4033119	101.1.9.63 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N	0.53	36.0	3.79e-01	92.8%	78.0%
4980234	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.53	45.0	3.85e-01	95.5%	91.3%
4315769	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.52	39.0	3.99e-01	92.8%	80.9%
5053266	1.1.5.17 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N	0.51	40.0	3.55e-01	82.0%	98.1%
5067070	1.1.5.17 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N	0.51	37.0	3.52e-01	77.5%	99.3%
4022018	3385.1.1.0 ↗	beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1	0.50	36.0	3.51e-01	76.6%	100.0%