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YP_001604270.1
Arc-VirNC_010153__YP_001604270.1__AFV7-gp46__00046
Identity
- Accession:
- NC_010153 ↗
- Protein ID:
- YP_001604270.1 ↗
- Kingdom:
- archaea
Quality
84.5
mean pLDDT
Taxonomy
Zilligvirae›
Taleaviricota›
Tokiviricetes›
Ligamenvirales›
Lipothrixviridae›
Betalipothrixvirus›
Betalipothrixvirus_pezzuloense
TaxID: 346883
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-123
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.61 | 30.0 | 2.84e-01 | 100.0% | 38.2% |
| 3bpsA02 | 2.60.120.690 | Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 | 0.61 | 32.0 | 2.89e-01 | 99.1% | 37.3% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 29.0 | 3.47e-01 | 85.7% | 67.1% |
| 2jvrA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 32.0 | 3.67e-01 | 92.0% | 70.0% |
| 1i94H01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.58 | 31.0 | 3.61e-01 | 100.0% | 73.1% |
| 2a2cA02 | 3.30.70.3170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 31.0 | 3.54e-01 | 95.5% | 75.0% |
| 2bolA03 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 38.0 | 4.12e-01 | 95.5% | 89.2% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 29.0 | 3.44e-01 | 100.0% | 78.7% |
| 3ehcB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 3.53e-01 | 73.2% | 85.9% |
| 6a2bA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 30.0 | 3.34e-01 | 100.0% | 71.9% |
| 1i6uA01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.51 | 27.0 | 3.31e-01 | 98.2% | 82.4% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 34.0 | 3.85e-01 | 100.0% | 95.1% |
| 4fppA02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 34.0 | 3.25e-01 | 98.2% | 56.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3315331 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.63 | 35.0 | 4.00e-01 | 99.1% | 73.8% |
| 3244029 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.63 | 38.0 | 4.51e-01 | 99.1% | 89.3% |
| 3651303 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.63 | 32.0 | 4.11e-01 | 97.3% | 88.3% |
| 3655963 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 31.0 | 3.82e-01 | 90.2% | 74.3% |
| 3372798 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.62 | 34.0 | 3.80e-01 | 98.2% | 68.2% |
| 3332958 | 304.8.1.57 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 | 0.60 | 33.0 | 3.99e-01 | 99.1% | 84.3% |
| 3438815 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.60 | 34.0 | 3.81e-01 | 99.1% | 71.8% |
| 3364258 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.59 | 34.0 | 3.80e-01 | 100.0% | 71.6% |
| 3700525 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 38.0 | 4.09e-01 | 100.0% | 76.8% |
| None | — | 0.57 | 43.0 | 3.23e-01 | 78.6% | 43.3% | |
| 3815146 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.56 | 46.0 | 3.36e-01 | 90.2% | 52.9% |
| 3325750 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.53 | 30.0 | 3.47e-01 | 99.1% | 76.2% |
| 3814481 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 37.0 | 3.45e-01 | 71.4% | 86.4% |
| 4102600 | 304.4.1.8 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › rhaM | 0.52 | 31.0 | 3.14e-01 | 92.0% | 56.5% |
| 4976606 | 2008.3.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Eukaryotic RPB5 N-terminal domain › Eukaryotic RPB5 N-terminal domain › Mrr_cat | 0.52 | 37.0 | 3.68e-01 | 75.0% | 99.2% |
| 4025843 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.50 | 37.0 | 3.76e-01 | 98.2% | 77.4% |