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NC_010179.2__YP_001642377.1__LJ771_034__00034

Bact-Vir

Identity

Accession:: NC_010179 ↗
Kingdom:: phage

Quality

73.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_prophage_Lj771

TaxID: 139871

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-77_91-123

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2b3tA01	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.61	41.0	4.53e-01	87.5%	85.7%
3jvoA00	1.10.3230.30	Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein	0.60	51.0	5.28e-01	100.0%	99.0%
1qr0A01	3.90.470.20	Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain	0.58	43.0	4.02e-01	93.3%	64.0%
7s0rB01	1.20.81.20	Mainly Alpha › Up-down Bundle › Receptor-associated Protein ›	0.56	38.0	4.25e-01	83.7%	96.1%
1l1lA01	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.55	49.0	3.15e-01	100.0%	81.8%
1z6tA03	1.10.8.430	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Helical domain of apoptotic protease-activating factors	0.53	38.0	4.19e-01	91.3%	96.3%
2m6uA00	1.20.81.20	Mainly Alpha › Up-down Bundle › Receptor-associated Protein ›	0.52	38.0	4.22e-01	79.8%	97.6%
3fbzA01	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	36.0	3.72e-01	86.5%	76.5%
3lfuA02	1.10.10.160	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.51	30.0	3.54e-01	94.2%	85.7%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3821726	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.69	46.0	5.40e-01	79.8%	100.0%
3783607	171.1.1.0 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like	0.64	51.0	4.48e-01	86.5%	59.4%
4468946	2003.1.2.15 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3	0.59	47.0	3.90e-01	89.4%	73.0%
3410545	108.2.1.0 ↗	alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins	0.58	40.0	3.93e-01	79.8%	64.3%
5069772	5067.1.1.2 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF	0.57	50.0	4.18e-01	100.0%	64.7%
3391169	103.4.1.25 ↗	alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF27628	0.56	37.0	4.33e-01	83.7%	100.0%
4039500	7014.1.1.1 ↗	alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA	0.54	38.0	3.59e-01	100.0%	60.8%
3279933	191.1.1.0 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain	0.53	41.0	3.75e-01	87.5%	61.1%
4943264	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.52	29.0	3.41e-01	71.2%	77.3%
5042057	3871.1.1.0 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST	0.51	36.0	3.78e-01	72.1%	82.8%