←Back to structures
NC_010391.1__YP_001700538.1__STM0895.Fels1__00005
Bact-VirNC_010391.1__YP_001700538.1__STM0895.Fels1__00005
Identity
- Accession:
- NC_010391 ↗
- Kingdom:
- phage
Quality
82.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 50-102
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ga6A02 | 1.20.970.50 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › | 0.69 | 50.0 | 3.54e-01 | 88.7% | 26.3% |
| 4ht4A00 | 3.30.930.30 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › | 0.69 | 60.0 | 4.12e-01 | 100.0% | 50.5% |
| 2b7oA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 58.0 | 3.50e-01 | 98.1% | 94.4% |
| 5iz3A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.66 | 57.0 | 4.01e-01 | 100.0% | 36.8% |
| 4hyqA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.62 | 52.0 | 3.47e-01 | 98.1% | 76.7% |
| 2oz8A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.61 | 43.0 | 3.29e-01 | 75.5% | 86.0% |
| 1tc5C00 | 3.50.80.10 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase | 0.58 | 51.0 | 3.51e-01 | 98.1% | 60.2% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 3.43e-01 | 84.9% | 40.8% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 46.0 | 3.42e-01 | 90.6% | 68.9% |
| 4jcmA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 49.0 | 2.98e-01 | 100.0% | 30.4% |
| 3otgA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.57 | 47.0 | 3.20e-01 | 100.0% | 44.2% |
| 4ztkA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 41.0 | 2.56e-01 | 79.2% | 16.4% |
| 1wr8A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.54 | 45.0 | 3.18e-01 | 92.5% | 100.0% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.52 | 38.0 | 3.21e-01 | 94.3% | 44.3% |
| 1z1nX02 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.52 | 41.0 | 3.38e-01 | 96.2% | 72.6% |
| 3vkgA10 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 2.72e-01 | 83.0% | 97.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4261739 | 3068.2.1.1 ↗ | a+b complex topology › Flagellar protein FlgA N-terminal domain-like › RNase J C-terminal domain › RNase J C-terminal domain › RNase_J_C | 0.79 | 70.0 | 5.48e-01 | 100.0% | 57.3% |
| 5083421 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.68 | 57.0 | 4.81e-01 | 94.3% | 76.7% |
| 3401234 | 3226.1.1.2 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp | 0.67 | 48.0 | 2.82e-01 | 75.5% | 12.9% |
| 5031272 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.65 | 57.0 | 3.69e-01 | 100.0% | 48.2% |
| 5075893 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.64 | 47.0 | 3.73e-01 | 90.6% | 38.2% |
| 3733568 | 192.8.1.342 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt | 0.63 | 53.0 | 4.02e-01 | 94.3% | 70.8% |
| 3677155 | 109.4.1.570 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps8 | 0.62 | 52.0 | 3.00e-01 | 90.6% | 21.8% |
| 2770740 | 4012.3.1.3 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI2 | 0.62 | 42.0 | 4.02e-01 | 71.7% | 61.7% |
| 1172093 | 222.1.1.10 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 | 0.62 | 48.0 | 3.89e-01 | 94.3% | 41.8% |
| 3939904 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 50.0 | 2.85e-01 | 88.7% | 9.6% |
| 3093620 | 5037.1.1.1 ↗ | alpha bundles › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › Photo_RC | 0.61 | 53.0 | 3.33e-01 | 98.1% | 43.0% |
| 3671086 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.61 | 52.0 | 3.52e-01 | 98.1% | 46.7% |
| 5057162 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.60 | 48.0 | 3.83e-01 | 96.2% | 88.8% |
| 4120820 | 246.2.1.22 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos, FBPase_2 | 0.59 | 46.0 | 2.87e-01 | 86.8% | 19.7% |
| 4962544 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.58 | 46.0 | 3.41e-01 | 90.6% | 41.6% |
| 3185295 | 129.1.1.51 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ADH_zinc_N | 0.58 | 42.0 | 2.84e-01 | 77.4% | 96.9% |
| 3410469 | 304.20.1.3 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D6 | 0.58 | 49.0 | 3.68e-01 | 100.0% | 62.9% |
| 4252006 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.57 | 51.0 | 3.61e-01 | 100.0% | 43.6% |
| 5055913 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 51.0 | 4.01e-01 | 100.0% | 58.2% |
| 3740632 | 2006.1.4.32 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, MKT1_N | 0.56 | 49.0 | 3.09e-01 | 98.1% | 47.8% |
| 3235938 | 304.131.1.1 ↗ | a+b two layers › Alpha-beta plaits › Phosphonoacetate hydrolase insertion domain › Phosphonoacetate hydrolase insertion domain › Phosphodiest | 0.56 | 50.0 | 3.98e-01 | 100.0% | 51.4% |
| 3567972 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 47.0 | 3.38e-01 | 90.6% | 80.7% |
| 1146672 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.55 | 42.0 | 3.24e-01 | 81.1% | 74.8% |
| 3941275 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 36.0 | 3.03e-01 | 81.1% | 36.2% |
| 3451856 | 2005.1.1.41 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C | 0.51 | 43.0 | 2.95e-01 | 92.5% | 50.0% |