←Back to structures
NC_010392.1__YP_001700620.1__STM2616.Gifsy1__00035
Bact-VirNC_010392.1__YP_001700620.1__STM2616.Gifsy1__00035
Identity
- Accession:
- NC_010392 ↗
- Kingdom:
- phage
Quality
74.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-113
Domain cluster:
rep: DQ320509.1__ABD78793.1__X__00016__D7-102
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10543.15 best | ORF6N | 76.3 | 2.60e-21 | 81.3% | 98.8% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gp4B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.84 | 43.0 | 4.00e-01 | 74.8% | 41.5% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.84 | 44.0 | 5.56e-01 | 80.4% | 83.6% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.78 | 42.0 | 5.05e-01 | 76.6% | 79.2% |
| 5d8cA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.77 | 42.0 | 3.97e-01 | 76.6% | 45.2% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.76 | 41.0 | 3.91e-01 | 76.6% | 46.3% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.76 | 42.0 | 5.03e-01 | 77.6% | 80.8% |
| 3ucsA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.75 | 42.0 | 4.37e-01 | 79.4% | 59.6% |
| 1l8rA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.71 | 55.0 | 5.67e-01 | 90.7% | 88.1% |
| 1y6uA01 | 3.90.105.50 | Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › | 0.70 | 34.0 | 4.54e-01 | 83.2% | 98.0% |
| 1sbxA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.65 | 50.0 | 5.10e-01 | 87.9% | 84.0% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 34.0 | 3.45e-01 | 84.1% | 56.7% |
| 1bm8A00 | 3.10.260.10 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain | 0.59 | 50.0 | 5.15e-01 | 98.1% | 100.0% |
| 4hplA00 | 3.10.260.40 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › BCL-6 corepressor, PCGF1 binding domain | 0.55 | 47.0 | 4.63e-01 | 99.1% | 89.4% |
| 3gr5A02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.54 | 32.0 | 3.80e-01 | 79.4% | 92.6% |
| 3mxnA02 | 6.10.140.770 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 23.0 | 3.15e-01 | 86.9% | 80.0% |
| 3broD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 35.0 | 3.24e-01 | 89.7% | 53.0% |
| 3u1dB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.53e-01 | 95.3% | 57.3% |
| 1fpqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.43e-01 | 99.1% | 58.9% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3983963 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.97 | 92.0 | 9.30e-01 | 96.3% | 99.0% |
| 1827815 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.90 | 46.0 | 5.81e-01 | 81.3% | 80.9% |
| 4604028 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.88 | 45.0 | 4.27e-01 | 75.7% | 44.0% |
| 4951929 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.86 | 46.0 | 5.50e-01 | 77.6% | 76.0% |
| 4657200 | 7526.1.1.0 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 | 0.83 | 44.0 | 2.76e-01 | 87.9% | 11.9% |
| 3590852 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.82 | 44.0 | 4.67e-01 | 83.2% | 58.9% |
| 3664931 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.82 | 39.0 | 5.64e-01 | 75.7% | 100.0% |
| 4061721 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.82 | 43.0 | 3.97e-01 | 75.7% | 42.3% |
| 4553393 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.81 | 42.0 | 5.80e-01 | 86.9% | 100.0% |
| 4549467 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.80 | 44.0 | 5.88e-01 | 99.1% | 98.3% |
| 4375269 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.80 | 44.0 | 5.61e-01 | 100.0% | 90.8% |
| 3281073 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.80 | 43.0 | 4.34e-01 | 75.7% | 53.3% |
| 4127906 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.80 | 41.0 | 5.71e-01 | 89.7% | 100.0% |
| 3366705 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.80 | 44.0 | 5.60e-01 | 95.3% | 90.8% |
| 4315777 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.79 | 44.0 | 3.96e-01 | 99.1% | 42.1% |
| 4551162 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.78 | 45.0 | 5.46e-01 | 100.0% | 87.1% |
| 4271700 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.78 | 45.0 | 5.73e-01 | 100.0% | 95.4% |
| 4210562 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.78 | 38.0 | 5.12e-01 | 74.8% | 86.7% |
| 4130472 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.77 | 44.0 | 5.57e-01 | 100.0% | 93.8% |
| 3951460 | 101.30.1.3 ↗ | alpha arrays › HTH › Rv2175c › Rv2175c › Rv2175c_wHTH | 0.77 | 40.0 | 4.32e-01 | 86.9% | 60.0% |
| 4473430 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.77 | 44.0 | 5.07e-01 | 100.0% | 76.2% |
| 4504812 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.77 | 44.0 | 4.85e-01 | 78.5% | 70.6% |
| 3947416 | 101.1.9.88 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha | 0.76 | 67.0 | 6.66e-01 | 100.0% | 90.9% |
| 4056248 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.76 | 42.0 | 3.87e-01 | 73.8% | 43.0% |
| 4668740 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.75 | 47.0 | 4.83e-01 | 83.2% | 64.8% |
| 4100614 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.75 | 39.0 | 5.37e-01 | 78.5% | 100.0% |
| 4548007 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.74 | 42.0 | 4.73e-01 | 81.3% | 71.8% |
| 4998593 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.73 | 54.0 | 5.33e-01 | 85.0% | 71.3% |
| 4032453 | 101.1.9.78 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA | 0.73 | 60.0 | 6.31e-01 | 95.3% | 97.9% |
| 5041445 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.73 | 44.0 | 4.80e-01 | 82.2% | 72.2% |
| 3984393 | 101.1.9.88 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha | 0.72 | 60.0 | 5.98e-01 | 98.1% | 85.5% |
| 3179612 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.72 | 47.0 | 5.49e-01 | 97.2% | 100.0% |
| 4954530 | 101.1.9.143 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM | 0.71 | 64.0 | 6.32e-01 | 99.1% | 97.4% |
| 4994828 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.70 | 34.0 | 4.12e-01 | 76.6% | 70.0% |
| 4270095 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.69 | 42.0 | 5.00e-01 | 83.2% | 91.4% |
| 3782429 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.67 | 54.0 | 5.53e-01 | 96.3% | 93.0% |
| 3941747 | 101.1.9.78 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA | 0.66 | 60.0 | 5.99e-01 | 100.0% | 96.4% |
| 3978692 | 101.1.9.143 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM | 0.65 | 59.0 | 5.29e-01 | 100.0% | 88.0% |
| 3785640 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.62 | 54.0 | 5.35e-01 | 97.2% | 96.5% |
| 3944712 | 101.1.9.40 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › P22_AR_N | 0.60 | 51.0 | 5.18e-01 | 98.1% | 94.3% |
| 3947892 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 29.0 | 4.04e-01 | 83.2% | 98.0% |
| 4009083 | 101.1.4.2 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI | 0.55 | 24.0 | 3.22e-01 | 85.0% | 75.0% |
| 4966187 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.57e-01 | 95.3% | 55.9% |
| 4948184 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 38.0 | 2.91e-01 | 75.7% | 69.3% |
| 4970626 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 38.0 | 2.84e-01 | 76.6% | 71.1% |
| 5068288 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.51 | 40.0 | 3.50e-01 | 85.0% | 63.5% |
D2
high
residues 136-185