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NC_010393.1__YP_001700688.1__STM1043.Gifsy2__00045

Bact-Vir

NC_010393.1__YP_001700688.1__STM1043.Gifsy2__00045

Identity

Accession:
NC_010393 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Phage_Gifsy-2

TaxID: 129862

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-164
PDB
Domain cluster: rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00271__D25-165
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13505.13 best OMP_b-brl 47.5 3.20e-12 100.0% 72.4%
PF06316.17 Ail_Lom 24.5 3.00e-05 38.5% 14.6%
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.91 87.0 8.43e-01 100.0% 89.9%
2f1vA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.80 75.0 6.69e-01 100.0% 89.6%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.79 74.0 6.76e-01 100.0% 87.8%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.79 74.0 6.32e-01 100.0% 91.2%
1i78B00 2.40.128.90 Mainly Beta › Beta Barrel › Lipocalin › OMPT-like 0.78 72.0 5.59e-01 100.0% 94.1%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.78 72.0 6.91e-01 100.0% 87.7%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.75 62.0 6.21e-01 100.0% 86.7%
2vdfA00 2.40.128.100 Mainly Beta › Beta Barrel › Lipocalin › OPCA outer membrane adhesin/invasin 0.72 66.0 5.53e-01 100.0% 94.2%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.70 65.0 6.29e-01 100.0% 93.3%
2lhfA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.70 65.0 5.85e-01 100.0% 92.7%
3bryA00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.68 50.0 3.58e-01 76.3% 43.4%
3dwoX00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.67 60.0 4.13e-01 96.3% 64.2%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.67 29.0 4.10e-01 100.0% 88.3%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.66 58.0 5.53e-01 100.0% 81.9%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.66 60.0 5.52e-01 100.0% 92.0%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 49.0 4.33e-01 78.5% 87.6%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.65 55.0 4.35e-01 91.9% 50.9%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.64 50.0 4.51e-01 83.7% 86.0%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.63 58.0 4.62e-01 100.0% 75.1%
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.63 46.0 4.58e-01 74.8% 100.0%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 45.0 4.49e-01 74.1% 98.6%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 4.42e-01 74.1% 90.1%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.62 45.0 3.20e-01 75.6% 31.2%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.61 46.0 4.51e-01 77.8% 95.8%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.60 44.0 4.44e-01 74.8% 100.0%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 4.29e-01 82.2% 96.0%
3zpmA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.60 47.0 4.12e-01 84.4% 83.9%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.60 55.0 4.22e-01 100.0% 70.6%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 53.0 5.08e-01 95.6% 89.0%
2o4vA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.59 55.0 3.85e-01 100.0% 89.3%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 4.34e-01 74.8% 99.2%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.58 52.0 3.33e-01 97.0% 86.8%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.58 53.0 4.32e-01 100.0% 68.0%
4aipC02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.58 53.0 3.43e-01 97.0% 71.7%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.57 52.0 4.18e-01 97.0% 67.1%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.57 50.0 4.93e-01 96.3% 89.8%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.56 50.0 3.28e-01 100.0% 82.1%
3fhhA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.56 50.0 3.39e-01 97.0% 44.7%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.56 50.0 3.70e-01 100.0% 53.0%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.56 50.0 3.51e-01 98.5% 37.8%
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.56 48.0 3.52e-01 94.1% 97.5%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.55 50.0 3.84e-01 100.0% 53.5%
3eniC00 2.50.10.10 Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A 0.55 44.0 3.26e-01 85.2% 59.3%
6eheA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 49.0 3.86e-01 100.0% 59.9%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 51.0 3.74e-01 100.0% 95.3%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.54 48.0 3.46e-01 100.0% 95.9%
4k3bA06 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.53 48.0 3.55e-01 100.0% 52.6%
1e54A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 49.0 3.65e-01 100.0% 94.9%
5fokA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.53 48.0 3.19e-01 97.8% 58.4%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.53 49.0 3.73e-01 100.0% 53.6%
6i7sG01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.53 48.0 3.90e-01 100.0% 86.3%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.53 48.0 3.19e-01 98.5% 29.4%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 40.0 3.75e-01 100.0% 65.5%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 46.0 3.42e-01 97.0% 51.8%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 4.09e-01 91.1% 86.7%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.50 40.0 3.86e-01 90.4% 74.8%
1cbyA00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.50 41.0 3.49e-01 94.8% 52.4%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980016 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 1.00 98.0 9.67e-01 100.0% 96.4%
3975352 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.92 90.0 8.51e-01 100.0% 89.5%
None — 0.91 87.0 8.43e-01 100.0% 89.9%
145377 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.87 85.0 8.07e-01 100.0% 88.8%
3838398 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.81 75.0 6.75e-01 100.0% 84.4%
3964096 5084.1.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.79 74.0 6.75e-01 100.0% 77.7%
3838975 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.79 73.0 6.54e-01 100.0% 90.3%
4116729 5084.1.1.6 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF 0.78 73.0 6.69e-01 100.0% 82.4%
3970312 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.78 73.0 6.56e-01 100.0% 92.2%
3839188 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.77 71.0 5.85e-01 100.0% 91.9%
4099548 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.76 70.0 6.77e-01 100.0% 91.3%
3385673 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.76 71.0 6.66e-01 100.0% 85.0%
4299005 5084.1.1.21 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TSA 0.74 69.0 6.07e-01 100.0% 78.9%
3838164 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.73 67.0 6.00e-01 100.0% 92.4%
4234836 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.69 65.0 4.89e-01 100.0% 69.5%
4582939 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.67 59.0 4.38e-01 92.6% 56.2%
4064323 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.64 48.0 3.36e-01 77.8% 27.8%
3525853 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.63 48.0 4.63e-01 80.0% 97.3%
2724175 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.62 51.0 4.13e-01 86.7% 72.5%
3332730 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.62 50.0 3.66e-01 85.2% 54.7%
3964155 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.61 55.0 4.45e-01 100.0% 96.2%
3326287 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.61 46.0 4.91e-01 98.5% 88.3%
3933957 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.60 53.0 5.03e-01 95.6% 85.0%
2410295 5084.5.4.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › PorV 0.59 51.0 4.34e-01 94.8% 85.8%
3808882 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.59 52.0 4.81e-01 96.3% 82.3%
3970016 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.59 54.0 3.88e-01 100.0% 90.2%
3970589 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.59 53.0 3.96e-01 100.0% 69.1%
4501883 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.58 51.0 3.77e-01 98.5% 94.9%
3352673 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.58 51.0 3.85e-01 97.8% 64.8%
3824904 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.57 51.0 3.85e-01 97.8% 65.8%
1806543 5084.5.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PgaA_barrel 0.57 49.0 3.91e-01 96.3% 92.1%
3428396 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.57 44.0 4.03e-01 82.2% 86.1%
3515197 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.56 49.0 4.58e-01 95.6% 77.1%
4336262 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.56 51.0 3.70e-01 98.5% 65.9%
3947597 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.56 50.0 3.81e-01 95.6% 74.3%
4044109 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.56 50.0 3.67e-01 95.6% 65.3%
3465157 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.55 50.0 3.70e-01 100.0% 53.1%
3969715 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.55 50.0 3.27e-01 96.3% 58.7%
2321077 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.55 49.0 3.74e-01 100.0% 64.6%
3937383 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 50.0 4.29e-01 100.0% 91.4%
4664957 5084.5.2.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like 0.54 50.0 3.54e-01 100.0% 37.6%
3429047 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.53 50.0 3.79e-01 100.0% 95.3%
3942123 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.53 46.0 3.34e-01 98.5% 67.7%
3718960 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.53 47.0 4.04e-01 96.3% 84.3%
3980178 7503.1.1.13 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › Lipoprotein_16 0.51 45.0 4.23e-01 97.8% 92.9%
3804993 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.51 45.0 3.44e-01 98.5% 46.3%