YP_001798522.1

Arc-Vir

NC_010537__YP_001798522.1__AFV9-gp04__00004

Identity

Accession:: NC_010537 ↗
Protein ID:: YP_001798522.1 ↗
Kingdom:: archaea

Quality

85.7 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Betalipothrixvirus› Betalipothrixvirus_uzonense

TaxID: 512792

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-60

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3g2bA00	1.10.10.1150	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD)	0.63	43.0	3.68e-01	89.8%	46.7%
4qarA00	3.40.50.1580	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain	0.60	46.0	3.26e-01	86.4%	94.9%
5c6dA01	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.53	33.0	2.82e-01	71.2%	34.6%
4q5eA02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.53	42.0	3.56e-01	84.7%	78.5%
4fixA01	3.90.550.60	Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A ›	0.53	36.0	2.22e-01	72.9%	16.6%
1q9jB02	3.30.559.30	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain	0.53	42.0	3.07e-01	100.0%	29.6%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3274996	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.63	43.0	2.62e-01	72.9%	38.3%
3170889	109.4.1.148 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind,EST1	0.61	45.0	2.64e-01	83.1%	30.5%
5019115	2004.1.1.260 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MEDS	0.56	41.0	2.83e-01	78.0%	54.6%
4345229	2003.1.1.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase	0.55	47.0	3.09e-01	93.2%	45.1%
3946272	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.54	43.0	3.20e-01	89.8%	61.8%
4978785	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.53	32.0	2.85e-01	81.4%	36.8%
4224431	101.1.1.32 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD	0.53	44.0	3.55e-01	100.0%	89.2%
3999372	198.1.1.4 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456	0.53	44.0	3.53e-01	96.6%	100.0%
5046867	212.1.1.3 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N	0.51	38.0	2.79e-01	83.1%	45.7%
3623319	292.2.1.0 ↗	a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain	0.50	42.0	3.86e-01	94.9%	73.8%
3941026	267.1.1.3 ↗	a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase	0.50	35.0	2.52e-01	72.9%	26.2%
3397596	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.50	35.0	2.84e-01	76.3%	36.7%