←Back to structures

YP_001798572.1

Arc-Vir

NC_010537__YP_001798572.1__AFV9-gp54__00054

Identity

Accession:
NC_010537 ↗
Protein ID:
YP_001798572.1 ↗
Kingdom:
archaea

Quality

47.9 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Betalipothrixvirus› Betalipothrixvirus_uzonense

TaxID: 512792

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 402-486
PDB
D2 high residues 972-1169
PDB
Domain cluster: rep: JF974305__AGF91207.1__HAPG-00021__00021__D140-317
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.79 60.0 6.12e-01 100.0% 79.5%
4agrB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.78 56.0 6.50e-01 99.0% 100.0%
8hhvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.78 39.0 4.89e-01 100.0% 77.9%
1gv9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.76 64.0 6.12e-01 100.0% 77.6%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.75 52.0 5.46e-01 100.0% 77.1%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.75 66.0 6.24e-01 100.0% 79.5%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.74 66.0 6.27e-01 100.0% 81.3%
1fx5B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.73 68.0 6.30e-01 100.0% 79.9%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.72 42.0 4.92e-01 100.0% 80.7%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 49.0 4.88e-01 100.0% 67.8%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.70 51.0 4.82e-01 100.0% 62.4%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 53.0 5.50e-01 100.0% 84.2%
3pvnA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 51.0 5.07e-01 100.0% 72.3%
1ux6A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 59.0 5.80e-01 100.0% 84.6%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 64.0 5.88e-01 100.0% 81.6%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.68 52.0 5.28e-01 100.0% 79.4%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.68 31.0 4.04e-01 98.5% 74.1%
4pbpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 50.0 4.94e-01 100.0% 72.8%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.67 52.0 5.50e-01 100.0% 89.8%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 51.0 5.36e-01 100.0% 87.2%
4dqaA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 47.0 4.63e-01 100.0% 68.7%
3kb5A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.65 50.0 5.12e-01 98.5% 81.9%
3dgtA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 58.0 5.15e-01 100.0% 80.9%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 57.0 5.04e-01 100.0% 78.6%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 36.0 4.51e-01 84.3% 98.4%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.57 36.0 4.08e-01 88.9% 80.6%
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 31.0 3.98e-01 95.5% 95.5%
2ivfC00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 4.19e-01 100.0% 75.7%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 28.0 3.30e-01 82.3% 72.9%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 33.0 3.74e-01 100.0% 84.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5011693 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.90 87.0 8.62e-01 100.0% 99.0%
3190424 10.1.1.49 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_59_C 0.81 59.0 6.20e-01 100.0% 81.1%
3261490 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.79 61.0 6.15e-01 100.0% 78.5%
5000263 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.79 58.0 5.91e-01 100.0% 76.9%
3583317 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.78 57.0 6.20e-01 100.0% 89.1%
4293129 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.78 68.0 6.23e-01 100.0% 72.0%
2048183 10.1.1.50 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Dit-like_CBM2 0.76 60.0 5.65e-01 100.0% 69.6%
3661818 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.75 39.0 5.20e-01 100.0% 90.9%
3203736 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.75 58.0 6.24e-01 100.0% 92.4%
4029923 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.75 58.0 5.55e-01 100.0% 69.8%
3342087 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.75 61.0 5.90e-01 100.0% 76.1%
4596967 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.75 67.0 6.34e-01 100.0% 79.8%
4425437 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.75 68.0 5.97e-01 100.0% 68.4%
3451914 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.74 67.0 6.32e-01 100.0% 80.0%
3928295 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.74 56.0 5.61e-01 100.0% 76.5%
3317594 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.73 69.0 6.21e-01 100.0% 75.1%
4937307 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.73 54.0 5.53e-01 99.5% 78.4%
3424631 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.73 69.0 6.16e-01 100.0% 79.2%
3342551 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.73 65.0 5.88e-01 100.0% 71.9%
4114695 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.72 68.0 6.03e-01 100.0% 71.6%
5018109 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.72 54.0 5.96e-01 98.5% 95.0%
4944752 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.72 42.0 5.28e-01 100.0% 94.2%
5082908 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.72 36.0 4.76e-01 100.0% 87.0%
4942247 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.72 39.0 5.11e-01 100.0% 94.5%
2491351 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.72 57.0 5.36e-01 100.0% 68.0%
3421782 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.72 68.0 6.22e-01 100.0% 83.2%
3361739 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.71 67.0 6.14e-01 100.0% 78.8%
3370179 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.71 66.0 5.92e-01 100.0% 72.2%
4426314 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.71 39.0 4.55e-01 99.5% 73.8%
4356192 10.1.1.45 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Bact_lectin 0.71 66.0 6.21e-01 99.5% 87.2%
3679968 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.70 55.0 5.54e-01 100.0% 80.3%
135303 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.70 53.0 5.47e-01 100.0% 83.2%
3378528 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.69 65.0 6.24e-01 100.0% 88.6%
3443454 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.69 62.0 5.72e-01 100.0% 75.2%
3806983 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.69 65.0 5.91e-01 100.0% 79.2%
3809268 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.69 64.0 5.87e-01 99.5% 81.6%
3482455 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.68 53.0 5.18e-01 100.0% 74.8%
4927537 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.68 54.0 5.17e-01 97.0% 72.4%
2102357 10.1.1.20 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TSP_C 0.68 58.0 5.59e-01 100.0% 81.1%
3281522 10.1.1.16 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 0.67 53.0 5.30e-01 100.0% 79.5%
3362052 10.32.1.38 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.67 34.0 3.93e-01 100.0% 64.8%
3949369 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 40.0 4.21e-01 100.0% 64.9%
4884107 10.1.1.44 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH131_N 0.63 48.0 4.38e-01 92.9% 60.6%
3597600 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 37.0 4.34e-01 100.0% 83.7%
4015056 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 57.0 5.16e-01 100.0% 82.1%
4015572 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 57.0 4.92e-01 100.0% 75.7%
3456752 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 57.0 4.61e-01 100.0% 57.0%
3811267 10.1.1.58 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.60 55.0 5.14e-01 100.0% 79.2%
3813157 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 54.0 4.62e-01 100.0% 61.3%
169280 222.1.1.23 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › ApeI-like 0.58 36.0 4.51e-01 84.3% 98.4%
5053966 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 26.0 3.93e-01 94.9% 98.8%
4382398 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.56 38.0 4.42e-01 83.3% 95.7%
4934001 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.51 32.0 3.96e-01 76.3% 100.0%
D3 medium residues 22-52
PDB
D4 medium residues 298-311_334-346_374-401
PDB
D5 medium residues 624-692
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3474381 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.50 36.0 2.35e-01 76.8% 84.7%
D6 medium residues 693-768_830-862_888-920
PDB