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NC_010576.1__YP_001828682.1__LaP1706_gp34__00034
Bact-VirNC_010576.1__YP_001828682.1__LaP1706_gp34__00034
Identity
- Accession:
- NC_010576 ↗
- Kingdom:
- phage
Quality
72.2
mean pLDDT
Taxonomy
TaxID: 475178
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-68
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qdfA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.64 | 33.0 | 3.15e-01 | 77.9% | 41.0% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.62 | 33.0 | 3.13e-01 | 79.4% | 43.6% |
| 2d54A02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.54 | 35.0 | 3.05e-01 | 80.9% | 40.5% |
| 4gl6A02 | 3.10.310.80 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Domain of unknown function (DUF5037), C-terminal subdomain | 0.52 | 36.0 | 2.88e-01 | 75.0% | 59.1% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 40.0 | 3.60e-01 | 88.2% | 92.1% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.52 | 31.0 | 2.83e-01 | 80.9% | 44.4% |
| 1sdoA00 | 3.40.91.20 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.50 | 42.0 | 3.09e-01 | 95.6% | 37.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3904616 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 38.0 | 2.73e-01 | 95.6% | 20.6% |
| 4561403 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 39.0 | 2.36e-01 | 97.1% | 8.7% |
| 3562817 | 220.1.1.120 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GARIL_Rab2_bd | 0.62 | 37.0 | 2.85e-01 | 91.2% | 25.0% |
| 5018724 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.60 | 36.0 | 3.28e-01 | 76.5% | 42.1% |
| 2593098 | 304.139.2.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 | 0.59 | 50.0 | 3.24e-01 | 95.6% | 93.8% |
| 3263832 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.59 | 42.0 | 3.72e-01 | 82.4% | 50.5% |
| 4976409 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.58 | 37.0 | 3.12e-01 | 95.6% | 40.9% |
| 3238544 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.58 | 38.0 | 2.65e-01 | 91.2% | 21.0% |
| 3980782 | 4038.1.1.7 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 | 0.56 | 40.0 | 2.65e-01 | 79.4% | 97.9% |
| 4971609 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.54 | 36.0 | 2.33e-01 | 70.6% | 80.8% |
| 3738924 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.53 | 35.0 | 3.26e-01 | 82.4% | 52.2% |
| 3508299 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.52 | 47.0 | 3.24e-01 | 98.5% | 93.5% |
| 4429278 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.52 | 45.0 | 2.75e-01 | 100.0% | 99.8% |
| 3828275 | 219.1.1.71 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 | 0.51 | 40.0 | 3.04e-01 | 89.7% | 35.6% |
| 5008483 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.50 | 38.0 | 2.49e-01 | 82.4% | 49.4% |
| 4933936 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.50 | 40.0 | 2.71e-01 | 89.7% | 31.3% |
| 3171938 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.50 | 38.0 | 3.24e-01 | 80.9% | 61.4% |