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NC_010945.1__YP_001974328.1__phiPH15_gp02__00002

Bact-Vir

NC_010945.1__YP_001974328.1__phiPH15_gp02__00002

Identity

Accession:
NC_010945 ↗
Kingdom:
phage

Quality

72.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aliceevansviridae› Streptococcus_phage_PH15

TaxID: 537874

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-176
PDB
Domain cluster: rep: NC_022765.1__YP_008770570.1__Riggi_13__00013__D58-158
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kxwA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.69 57.0 5.52e-01 87.4% 96.0%
4hlbA00 3.30.70.2960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 54.0 5.74e-01 82.9% 100.0%
3prbA03 3.30.70.2210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 42.0 4.99e-01 71.2% 95.9%
3vseB02 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.66 42.0 4.40e-01 82.9% 70.0%
5o5jC01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.66 49.0 5.41e-01 87.4% 96.7%
4ftfA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.63 50.0 5.10e-01 84.7% 87.2%
1jphA00 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.62 51.0 3.59e-01 89.2% 67.8%
1b5eA00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.62 50.0 3.82e-01 84.7% 89.2%
4g1iA03 3.30.70.1770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 38.0 4.52e-01 71.2% 98.6%
2y2wC02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 50.0 3.53e-01 96.4% 95.7%
2ayaA00 3.30.300.150 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DNA polymerase III, tau subunit, domain V 0.58 37.0 3.60e-01 70.3% 56.2%
3u4qA06 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.58 49.0 3.96e-01 93.7% 72.7%
3fovA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 47.0 4.92e-01 96.4% 97.1%
2rrlA01 3.30.750.140 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.57 39.0 3.95e-01 75.7% 68.7%
5dmmA00 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.57 46.0 3.47e-01 88.3% 60.8%
3fg9C01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 42.0 3.84e-01 76.6% 66.4%
4fvaC00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.56 47.0 3.65e-01 92.8% 81.7%
8gtzA03 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 38.0 3.29e-01 96.4% 43.1%
2jc4A00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.56 49.0 3.72e-01 95.5% 62.9%
1bixA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.54 47.0 3.56e-01 95.5% 79.6%
7n3yC01 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.54 48.0 3.40e-01 99.1% 69.2%
1bvyB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 44.0 2.95e-01 87.4% 61.9%
4wd1A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.54 45.0 4.31e-01 89.2% 94.5%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.54 47.0 4.11e-01 95.5% 86.0%
2fgyA03 3.30.1330.140 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain 0.54 47.0 4.67e-01 97.3% 96.6%
1s14B00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 42.0 3.64e-01 84.7% 54.5%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 47.0 3.79e-01 98.2% 63.0%
5iipA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 31.0 3.14e-01 91.9% 55.2%
4jvtA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.53 38.0 3.13e-01 76.6% 60.2%
5wydA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.53 39.0 3.26e-01 79.3% 59.3%
6lpmA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 46.0 3.59e-01 99.1% 53.8%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.52 31.0 3.14e-01 72.1% 59.5%
1h7sA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 40.0 3.37e-01 84.7% 53.9%
3pe5A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.51 41.0 3.15e-01 90.1% 99.6%
5ghrA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.51 37.0 3.61e-01 76.6% 77.6%
3ot6A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.50 37.0 2.99e-01 78.4% 93.0%
3k93A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.50 44.0 3.54e-01 97.3% 58.3%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3618616 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.74 55.0 5.40e-01 77.5% 83.2%
3970458 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.72 48.0 5.66e-01 73.9% 100.0%
1563558 3261.1.1.1 ↗ a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON 0.71 42.0 4.81e-01 70.3% 80.2%
3286213 327.6.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like 0.70 52.0 5.18e-01 77.5% 81.7%
4952836 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.69 50.0 5.41e-01 88.3% 92.2%
4222810 327.10.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA 0.69 55.0 5.52e-01 86.5% 96.5%
4331700 327.10.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA 0.69 51.0 4.98e-01 77.5% 90.0%
4485602 327.13.1.14 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › Yop-YscD_ppl_3rd 0.68 43.0 5.13e-01 77.5% 98.6%
4973518 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.68 44.0 4.96e-01 75.7% 85.9%
5029780 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.68 52.0 4.86e-01 81.1% 75.7%
4626207 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.67 46.0 5.27e-01 74.8% 97.5%
3371640 2003.1.5.156 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 0.67 62.0 4.00e-01 100.0% 52.4%
3387840 327.10.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA 0.67 50.0 4.94e-01 79.3% 82.5%
4606259 327.6.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane 0.67 51.0 4.88e-01 79.3% 74.4%
410598 327.7.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C 0.66 42.0 4.94e-01 71.2% 94.7%
4980979 327.6.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P 0.66 46.0 5.20e-01 72.1% 100.0%
5043638 3261.1.1.0 ↗ a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.66 49.0 5.30e-01 78.4% 97.9%
4354951 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.64 47.0 5.05e-01 76.6% 100.0%
4432583 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.64 45.0 5.05e-01 77.5% 96.5%
3789262 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.64 56.0 3.81e-01 95.5% 81.0%
4933915 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.64 56.0 4.98e-01 96.4% 81.2%
3808192 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.63 56.0 4.11e-01 98.2% 72.9%
3404978 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.63 55.0 3.88e-01 96.4% 73.1%
3903935 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.63 55.0 3.97e-01 96.4% 74.7%
3895081 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.62 55.0 3.64e-01 96.4% 72.8%
3654691 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.62 55.0 3.98e-01 98.2% 73.8%
4092189 327.11.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 0.62 49.0 4.93e-01 85.6% 96.5%
3812516 131.1.1.15 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › Ppx-GppA_III 0.62 46.0 3.70e-01 77.5% 88.6%
None — 0.62 39.0 2.83e-01 76.6% 22.2%
3839738 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.61 45.0 4.91e-01 77.5% 98.9%
5014111 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.61 50.0 5.21e-01 86.5% 97.0%
5013125 327.6.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P 0.60 49.0 5.22e-01 95.5% 100.0%
3088103 131.1.1.16 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › Ppx_C 0.60 40.0 3.45e-01 97.3% 42.3%
3221572 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 49.0 3.86e-01 90.1% 65.8%
3273659 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.59 52.0 3.63e-01 97.3% 74.4%
4607429 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.59 51.0 3.92e-01 96.4% 63.5%
4346470 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.58 51.0 3.85e-01 98.2% 60.0%
4133737 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.58 50.0 4.21e-01 95.5% 81.9%
4375784 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.58 48.0 4.98e-01 100.0% 96.2%
4626907 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 50.0 3.85e-01 97.3% 62.9%
3843599 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.57 47.0 4.09e-01 90.1% 93.1%
4096358 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.57 47.0 3.98e-01 92.8% 75.0%
4932500 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.57 45.0 4.64e-01 94.6% 89.5%
4467601 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.57 50.0 3.83e-01 97.3% 61.2%
4389411 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.57 50.0 3.84e-01 98.2% 60.5%
4950270 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.57 42.0 3.55e-01 79.3% 80.5%
4974216 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 49.0 4.41e-01 100.0% 71.5%
3193428 246.2.1.3 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,Metallophos_C 0.56 44.0 3.02e-01 82.9% 34.6%
4667311 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.56 48.0 4.84e-01 98.2% 94.8%
4225517 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.55 48.0 3.91e-01 98.2% 72.0%
4063889 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.55 47.0 4.74e-01 98.2% 94.7%
4139009 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.55 47.0 4.66e-01 98.2% 92.2%
3743228 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.54 46.0 4.01e-01 93.7% 85.1%
4641844 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 46.0 2.64e-01 93.7% 30.7%
3635696 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.54 46.0 3.89e-01 93.7% 83.2%
3960088 4126.1.1.5 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA_2 0.54 48.0 4.40e-01 97.3% 90.3%
4002352 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.54 42.0 3.50e-01 83.8% 88.0%
3957683 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.53 42.0 3.84e-01 84.7% 71.1%
4212999 2003.1.5.259 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020, Cons_hypoth95, Methyltrans_SAM 0.53 45.0 2.94e-01 95.5% 39.6%
3593835 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.53 43.0 3.14e-01 88.3% 38.4%
4078456 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.52 39.0 3.57e-01 78.4% 80.7%
3282565 7579.1.1.118 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, FrsA-like 0.52 46.0 3.14e-01 98.2% 42.2%
2813817 225.3.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Virion egress protein UL31 homolog › Virion egress protein UL31 homolog › Herpes_UL31 0.51 45.0 3.58e-01 99.1% 61.0%
4551619 2003.1.5.259 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020, Cons_hypoth95, Methyltrans_SAM 0.51 44.0 2.89e-01 97.3% 32.3%
4976626 3714.1.1.0 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.51 40.0 3.24e-01 86.5% 84.9%