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NC_010945.1__YP_001974368.1__phiPH15_gp42__00042

Bact-Vir

NC_010945.1__YP_001974368.1__phiPH15_gp42__00042

Identity

Accession:
NC_010945 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aliceevansviridae› Streptococcus_phage_PH15

TaxID: 537874

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-117
PDB
Domain cluster: rep: OQ240260.1__WCZ55021.1__X__00042__D3-93
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11114.14 best Minor_capsid_2 134.6 2.20e-39 98.3% 100.0%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r4dA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 33.0 3.70e-01 99.1% 64.1%
6tznA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 39.0 4.09e-01 98.3% 70.4%
4y93A03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 30.0 2.57e-01 94.0% 30.3%
6tuaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 31.0 2.63e-01 92.2% 30.9%
4u7mA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 3.46e-01 97.4% 64.9%
4a4xA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 33.0 2.84e-01 78.4% 34.4%
2iepA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 3.45e-01 97.4% 64.6%
3kvqA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 28.0 3.22e-01 93.1% 67.1%
5n1qB02 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 44.0 4.11e-01 94.8% 70.1%
6vg3B02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 30.0 2.58e-01 93.1% 32.8%
3sqgB02 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 4.03e-01 95.7% 70.3%
2druA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.62e-01 99.1% 74.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3700542 304.9.1.107 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › FAZ1_cons 0.60 41.0 4.47e-01 94.8% 87.4%
3703735 375.1.1.207 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FAZ1_cons 0.58 42.0 4.49e-01 100.0% 89.0%
3600656 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 44.0 3.11e-01 85.3% 55.5%
3600728 206.1.1.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.53 42.0 2.84e-01 85.3% 55.6%
3842059 11.1.1.927 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29951 0.52 44.0 4.30e-01 96.6% 86.4%
3739543 206.1.1.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.51 40.0 2.74e-01 85.3% 45.9%
4933933 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.51 42.0 3.41e-01 94.0% 93.1%
3476903 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 40.0 3.03e-01 88.8% 57.1%