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NC_010945.1__YP_001974382.1__phiPH15_gp56__00056
Bact-VirNC_010945.1__YP_001974382.1__phiPH15_gp56__00056
Identity
- Accession:
- NC_010945 ↗
- Kingdom:
- phage
Quality
94.4
mean pLDDT
Taxonomy
TaxID: 537874
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-94
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hstA02 | 1.10.10.2580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin Acylase III; Chain A, Domain 2 | 0.67 | 26.0 | 3.13e-01 | 96.8% | 49.2% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.59 | 43.0 | 2.97e-01 | 77.4% | 39.1% |
| 1wdeA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.56 | 40.0 | 3.27e-01 | 74.2% | 87.4% |
| 5hsgA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 44.0 | 3.76e-01 | 87.1% | 78.1% |
| 1khbA03 | 3.90.228.20 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.56 | 47.0 | 3.52e-01 | 97.8% | 71.1% |
| 2z0rA00 | 3.40.1350.90 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › Uncharacterised protein PF11572, DUF3234 | 0.55 | 45.0 | 4.46e-01 | 93.5% | 87.6% |
| 1a79A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.54 | 40.0 | 3.94e-01 | 78.5% | 96.0% |
| 2hxsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 42.0 | 3.56e-01 | 90.3% | 80.3% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 38.0 | 3.90e-01 | 78.5% | 98.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3641260 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.64 | 33.0 | 2.92e-01 | 79.6% | 34.1% |
| 3974536 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 47.0 | 3.14e-01 | 94.6% | 99.8% |
| 3847882 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.56 | 48.0 | 2.83e-01 | 95.7% | 68.9% |
| 5035473 | 7592.1.1.8 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF_Card1 | 0.56 | 46.0 | 4.06e-01 | 90.3% | 97.9% |
| 3586917 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.55 | 47.0 | 3.36e-01 | 98.9% | 79.7% |
| 3605286 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.54 | 38.0 | 3.77e-01 | 73.1% | 95.0% |
| 3481160 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.53 | 45.0 | 3.10e-01 | 98.9% | 96.2% |
| 3188926 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.52 | 45.0 | 3.06e-01 | 100.0% | 64.1% |
| 4034282 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.52 | 29.0 | 3.18e-01 | 71.0% | 65.0% |
| 3284206 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 43.0 | 3.77e-01 | 94.6% | 86.7% |
| 5017985 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.52 | 42.0 | 3.02e-01 | 91.4% | 42.6% |
| 4072161 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.50 | 41.0 | 3.57e-01 | 94.6% | 66.3% |
| 4024983 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 32.0 | 3.47e-01 | 78.5% | 76.2% |