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NC_011039.1__YP_002003383.1__PREDATR_25__00025
Bact-VirNC_011039.1__YP_002003383.1__PREDATR_25__00025
Identity
- Accession:
- NC_011039 ↗
- Kingdom:
- phage
Quality
72.3
mean pLDDT
Taxonomy
TaxID: 543153
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 63-134
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1oaoC04 | 3.40.970.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › Carbon monoxide dehydrogenase alpha subunit. Chain D, domain 4 | 0.61 | 41.0 | 3.81e-01 | 100.0% | 54.9% |
| 1rp5A03 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 4.12e-01 | 100.0% | 96.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3595250 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 44.0 | 4.77e-01 | 95.8% | 96.7% |
| 4962009 | 304.139.1.3 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 | 0.59 | 51.0 | 3.42e-01 | 100.0% | 84.1% |
| 3487475 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 47.0 | 4.54e-01 | 100.0% | 77.6% |
| 3831150 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 43.0 | 4.17e-01 | 100.0% | 71.8% |
| 3247678 | 73.1.1.3 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 | 0.56 | 45.0 | 3.37e-01 | 90.3% | 88.7% |
| 2448408 | 102.1.3.17 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › CD_NTase_C | 0.56 | 40.0 | 3.54e-01 | 77.8% | 87.1% |
| 5078527 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.54 | 47.0 | 4.48e-01 | 100.0% | 89.4% |
| 1489671 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.53 | 36.0 | 3.94e-01 | 98.6% | 89.3% |
| 5065459 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.51 | 44.0 | 4.01e-01 | 100.0% | 84.0% |
| 3305609 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.50 | 45.0 | 4.39e-01 | 100.0% | 96.2% |
| 3280837 | 3982.1.1.1 ↗ | a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › DUF2511 | 0.50 | 39.0 | 3.67e-01 | 86.1% | 91.1% |
| 3446806 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.50 | 45.0 | 4.26e-01 | 98.6% | 100.0% |