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NC_011039.1__YP_002003432.1__PREDATR_74__00074

Bact-Vir

NC_011039.1__YP_002003432.1__PREDATR_74__00074

Identity

Accession:
NC_011039 ↗
Kingdom:
phage

Quality

79.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Predatorvirus› Mycobacterium_phage_Predator

TaxID: 543153

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-101
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 44.0 4.97e-01 76.4% 78.8%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.69 39.0 4.77e-01 74.2% 92.6%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 38.0 4.73e-01 74.2% 96.2%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 4.51e-01 80.9% 62.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 38.0 4.70e-01 74.2% 100.0%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.65 38.0 4.50e-01 77.5% 91.2%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 40.0 4.58e-01 74.2% 88.9%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 38.0 4.66e-01 74.2% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 40.0 4.42e-01 74.2% 84.8%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 40.0 4.54e-01 76.4% 86.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 39.0 4.20e-01 82.0% 75.3%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.34e-01 77.5% 75.0%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.46e-01 74.2% 90.3%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 41.0 4.41e-01 75.3% 80.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.39e-01 74.2% 88.9%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 38.0 4.26e-01 75.3% 84.1%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.35e-01 86.5% 83.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 36.0 4.06e-01 75.3% 83.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 38.0 4.47e-01 75.3% 100.0%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 39.0 4.34e-01 74.2% 87.1%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.80e-01 84.3% 93.4%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 40.0 4.27e-01 85.4% 81.0%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 38.0 4.47e-01 73.0% 100.0%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 4.13e-01 74.2% 87.7%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 4.28e-01 74.2% 93.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.21e-01 77.5% 87.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.05e-01 74.2% 81.3%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 39.0 4.02e-01 78.7% 75.6%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 38.0 3.53e-01 70.8% 84.8%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 4.04e-01 75.3% 87.2%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 38.0 3.42e-01 75.3% 98.4%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 36.0 3.89e-01 74.2% 84.2%
1fvuB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.52 38.0 3.50e-01 78.7% 76.9%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.50 35.0 3.23e-01 74.2% 85.5%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 37.0 3.89e-01 82.0% 89.6%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.79e-01 83.1% 90.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4976092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 53.0 5.35e-01 79.8% 70.0%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 46.0 5.32e-01 85.4% 84.6%
5074749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 44.0 4.91e-01 78.7% 74.3%
4963650 4.1.1.488 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7346 0.75 41.0 4.97e-01 75.3% 85.5%
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 49.0 5.53e-01 76.4% 92.3%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 40.0 4.89e-01 76.4% 85.5%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 49.0 4.97e-01 82.0% 70.0%
4306285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 46.0 5.12e-01 77.5% 82.9%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.71 46.0 5.20e-01 77.5% 86.8%
4574546 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 47.0 5.36e-01 82.0% 92.3%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.71 41.0 4.96e-01 71.9% 92.7%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.70 50.0 5.21e-01 78.7% 81.2%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.69 48.0 4.73e-01 78.7% 67.4%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 46.0 4.66e-01 78.7% 70.0%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.68 47.0 4.82e-01 78.7% 75.3%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 41.0 4.75e-01 77.5% 88.3%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 45.0 5.06e-01 75.3% 93.8%
4870495 304.169.1.1 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.67 46.0 4.30e-01 78.7% 58.3%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 45.0 4.34e-01 77.5% 63.0%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 42.0 4.70e-01 76.4% 89.2%
3717155 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.24e-01 80.9% 72.9%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 41.0 4.66e-01 76.4% 89.2%
3936926 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 40.0 4.50e-01 82.0% 84.6%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.64 39.0 4.44e-01 79.8% 83.1%
3591870 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 4.30e-01 80.9% 82.3%
3523802 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 41.0 4.80e-01 82.0% 98.3%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.63 39.0 4.33e-01 74.2% 78.6%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 41.0 4.58e-01 74.2% 89.2%
3925803 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 48.0 4.53e-01 82.0% 75.5%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 40.0 4.53e-01 76.4% 89.2%
3842631 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.63 41.0 4.57e-01 82.0% 85.7%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 40.0 4.53e-01 76.4% 89.2%
3736088 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 46.0 4.39e-01 77.5% 99.0%
3703449 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 46.0 4.87e-01 77.5% 97.3%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 40.0 4.52e-01 82.0% 89.2%
3590827 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 40.0 4.47e-01 77.5% 89.2%
3175156 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 43.0 4.77e-01 73.0% 94.3%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.62 48.0 4.54e-01 84.3% 96.4%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.61 40.0 4.34e-01 76.4% 84.3%
3942998 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.61 40.0 4.46e-01 73.0% 85.7%
3416133 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 43.0 4.60e-01 85.4% 89.3%
3390533 4.8.1.19 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › WAC_Acf1_DNA_bd 0.59 42.0 3.47e-01 75.3% 43.8%
3483489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 38.0 4.06e-01 74.2% 77.3%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.49e-01 77.5% 89.3%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.58 37.0 3.87e-01 74.2% 71.2%
3347795 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.57 41.0 4.31e-01 82.0% 85.0%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 41.0 4.45e-01 77.5% 96.0%
3826141 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.29e-01 80.9% 86.7%
3251170 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 38.0 4.17e-01 73.0% 87.1%
3925731 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.56 44.0 3.50e-01 95.5% 41.1%
3940986 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.56 41.0 4.46e-01 77.5% 98.7%
4021402 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 45.0 3.15e-01 91.0% 85.9%
5070832 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 41.0 3.44e-01 78.7% 97.4%
3251391 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.55 37.0 2.54e-01 70.8% 63.5%
3898170 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 41.0 4.36e-01 79.8% 100.0%
3917464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 4.32e-01 76.4% 100.0%
3910914 4111.1.1.3 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › DUF1907 0.53 37.0 3.05e-01 76.4% 38.8%
5044200 289.1.1.0 ↗ a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase 0.53 37.0 3.05e-01 73.0% 64.8%
4982943 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 36.0 3.13e-01 71.9% 64.3%
3537276 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 37.0 3.66e-01 89.9% 72.6%