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NC_011167.1__YP_002154332.1__IEBH_gp07__00007

Bact-Vir

NC_011167.1__YP_002154332.1__IEBH_gp07__00007

Identity

Accession:
NC_011167 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-82
PDB
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.84 58.0 5.26e-01 100.0% 55.1%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.73 62.0 5.42e-01 100.0% 63.6%
5mmjj00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.70 62.0 5.54e-01 100.0% 73.7%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.70 63.0 5.54e-01 100.0% 68.6%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 53.0 3.87e-01 100.0% 31.8%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.67 48.0 3.15e-01 94.2% 18.2%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 51.0 3.77e-01 100.0% 30.8%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 59.0 5.13e-01 100.0% 67.6%
2xefA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.66 48.0 3.07e-01 94.2% 16.9%
1ne2B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 48.0 3.54e-01 100.0% 30.6%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 46.0 4.09e-01 100.0% 52.9%
5c0oH00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 51.0 3.59e-01 100.0% 28.9%
2xq0A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.62 36.0 2.70e-01 100.0% 21.8%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.62 41.0 3.44e-01 100.0% 40.2%
1o54A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 49.0 3.56e-01 100.0% 31.6%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 34.0 2.89e-01 78.3% 30.8%
3zyzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 35.0 2.85e-01 87.0% 30.3%
1b3tA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.59 48.0 3.71e-01 100.0% 40.8%
3e05B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 44.0 3.35e-01 100.0% 30.7%
5eqjB02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 49.0 3.50e-01 100.0% 45.7%
5tf0B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 3.01e-01 88.4% 36.9%
2yvlA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 46.0 3.41e-01 100.0% 32.3%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.68e-01 100.0% 55.4%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 47.0 3.53e-01 91.3% 47.4%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 52.0 3.62e-01 100.0% 36.7%
1rm6D04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.56 37.0 2.60e-01 92.8% 20.3%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.56 48.0 3.84e-01 98.6% 72.9%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 32.0 2.52e-01 98.6% 27.1%
4oifA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 34.0 3.64e-01 100.0% 71.0%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.54 40.0 2.87e-01 82.6% 78.2%
4kdcA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 48.0 3.38e-01 100.0% 35.9%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.54 35.0 3.90e-01 92.8% 88.7%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.53 46.0 3.08e-01 100.0% 89.5%
3mb5A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 45.0 3.39e-01 100.0% 47.2%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.53 42.0 2.65e-01 94.2% 48.7%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 44.0 3.49e-01 100.0% 93.5%
4f0aB02 3.30.2460.20 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain 0.51 42.0 4.25e-01 98.6% 95.6%
3wlvA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.50 40.0 2.70e-01 91.3% 25.4%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2755624 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.76 68.0 5.23e-01 100.0% 45.8%
4260992 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.75 56.0 4.10e-01 98.6% 29.5%
4943323 304.44.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.74 68.0 5.84e-01 100.0% 67.3%
4584621 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.73 68.0 5.91e-01 100.0% 70.0%
5041672 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.73 66.0 5.76e-01 100.0% 68.0%
3944327 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.72 56.0 4.10e-01 100.0% 31.4%
4994692 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.72 66.0 5.56e-01 100.0% 63.6%
5057906 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.71 63.0 5.49e-01 100.0% 70.5%
3929905 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.70 61.0 5.12e-01 100.0% 56.7%
3740450 328.1.1.3 a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.69 55.0 5.03e-01 97.1% 66.7%
4336917 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.69 51.0 3.75e-01 98.6% 28.7%
4022277 328.1.1.3 a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.69 59.0 5.09e-01 100.0% 60.2%
3620540 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.67 58.0 4.72e-01 100.0% 51.4%
9346 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.67 51.0 3.77e-01 100.0% 30.6%
4877695 304.51.1.3 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc 0.66 57.0 4.51e-01 100.0% 73.2%
4986411 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.66 53.0 3.78e-01 98.6% 30.3%
3410286 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.65 35.0 3.18e-01 84.1% 38.9%
5008301 2003.1.5.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.64 51.0 3.70e-01 100.0% 31.6%
4029363 304.20.1.2 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.63 56.0 4.28e-01 100.0% 44.4%
3476505 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.63 54.0 4.46e-01 98.6% 60.0%
3617902 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.63 56.0 4.91e-01 100.0% 68.0%
1030896 2003.1.5.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.61 49.0 3.56e-01 100.0% 31.4%
3793874 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 53.0 4.46e-01 100.0% 74.2%
4983853 2003.1.5.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.61 50.0 3.58e-01 100.0% 32.1%
4973031 2003.1.5.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.60 46.0 3.40e-01 98.6% 31.7%
4982455 2003.1.5.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.60 51.0 3.79e-01 98.6% 47.4%
3209489 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.59 51.0 3.31e-01 100.0% 92.5%
4969283 2003.1.5.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.59 52.0 3.66e-01 100.0% 32.2%
3270426 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.59 51.0 4.51e-01 100.0% 67.6%
4950334 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 47.0 3.20e-01 91.3% 75.0%
3516207 327.6.1.6 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin 0.59 51.0 3.64e-01 100.0% 94.1%
4951063 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.59 45.0 3.37e-01 98.6% 32.2%
3282303 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.58 47.0 3.29e-01 100.0% 25.2%
4507539 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.58 51.0 4.52e-01 100.0% 84.0%
3976202 304.139.1.4 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 0.57 48.0 3.14e-01 100.0% 86.0%
3734676 2003.1.5.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.56 51.0 3.32e-01 100.0% 23.5%
3721393 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 48.0 4.04e-01 100.0% 63.2%
4600281 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.56 49.0 4.26e-01 100.0% 75.2%
4929832 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.56 46.0 4.06e-01 100.0% 61.5%
5083453 304.139.1.3 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 0.55 47.0 3.16e-01 100.0% 82.0%
5042433 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.55 42.0 3.16e-01 100.0% 31.9%
5052711 304.55.2.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.55 45.0 3.76e-01 100.0% 69.3%
3211117 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.54 48.0 4.05e-01 100.0% 93.9%
4493480 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.54 46.0 4.09e-01 100.0% 84.6%
3190947 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.53 44.0 2.80e-01 94.2% 28.4%
5010248 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.53 37.0 3.54e-01 89.9% 63.7%
5050142 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.52 44.0 3.62e-01 100.0% 69.3%
3580020 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.52 39.0 2.97e-01 85.5% 74.4%
1488213 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.52 45.0 3.22e-01 100.0% 76.7%
3601788 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 43.0 3.42e-01 100.0% 61.8%
5053935 2003.1.5.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.51 41.0 3.04e-01 97.1% 32.4%
3478432 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 3.59e-01 100.0% 64.1%
3517061 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.51 43.0 3.22e-01 100.0% 42.6%
4941422 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.50 42.0 3.33e-01 100.0% 42.5%
3967141 327.16.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin 0.50 43.0 2.92e-01 98.6% 79.6%