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NC_011273.1__YP_002225013.1__MYRNA_102__00095
Bact-VirNC_011273.1__YP_002225013.1__MYRNA_102__00095
Identity
- Accession:
- NC_011273 ↗
- Kingdom:
- phage
Quality
62.7
mean pLDDT
Taxonomy
TaxID: 546805
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 45-135_279-427
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23802.2 best | DUF7178 | 50.0 | 4.90e-13 | 35.8% | 37.3% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7x4eA01 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.64 | 24.0 | 3.47e-01 | 86.3% | 72.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4020363 | 102.1.2.9 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › DUF1688 | 0.68 | 59.0 | 4.95e-01 | 90.8% | 97.9% |
| 3391839 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.58 | 49.0 | 5.20e-01 | 87.1% | 99.0% |
| 4476435 | 102.1.2.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › AGOG | 0.58 | 50.0 | 4.75e-01 | 90.4% | 99.3% |
| 5001045 | 102.1.2.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › AGOG | 0.54 | 46.0 | 4.55e-01 | 90.8% | 98.8% |
| 3838133 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.53 | 15.0 | 2.89e-01 | 80.0% | 84.0% |
D2
high
residues 143-274
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h0dB02 | 1.10.1200.150 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain | 0.51 | 30.0 | 3.66e-01 | 73.5% | 93.8% |
| 7zllA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 38.0 | 3.06e-01 | 78.8% | 74.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3403479 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 31.0 | 3.89e-01 | 87.1% | 88.0% |
| 5006203 | 3558.1.1.0 ↗ | alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain | 0.57 | 28.0 | 3.00e-01 | 83.3% | 50.8% |
| 4990335 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.55 | 31.0 | 3.29e-01 | 74.2% | 60.0% |
D3
medium
residues 582-636