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NC_011273.1__YP_002225082.1__MYRNA_203__00164

Bact-Vir

Identity

Accession:: NC_011273 ↗
Kingdom:: phage

Quality

65.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myrnavirus› Mycobacterium_phage_Myrna

TaxID: 546805

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-118

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h20A04	1.10.1240.50	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.61	45.0	4.51e-01	83.1%	76.4%
1c52A00	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.60	43.0	3.72e-01	75.9%	62.6%
2guhB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	47.0	3.80e-01	89.2%	87.1%
4dxwA02	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.59	45.0	4.16e-01	98.8%	62.5%
3p7nA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	40.0	4.26e-01	72.3%	81.9%
1x04A00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.58	35.0	2.69e-01	85.5%	25.0%
1vkeB00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.58	41.0	3.89e-01	74.7%	66.3%
3fhgA02	1.10.340.30	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2	0.57	39.0	3.58e-01	71.1%	53.1%
3lysA00	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.57	39.0	3.69e-01	72.3%	58.1%
2qgyB01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.56	39.0	3.34e-01	73.5%	77.4%
4nn1A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	45.0	3.41e-01	89.2%	78.5%
3p9dG01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.54	42.0	3.07e-01	86.7%	78.7%
6nqiA01	3.30.420.230	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Prp8 RNase H domain, palm region	0.51	39.0	3.37e-01	84.3%	90.8%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3293600	101.1.1.65 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4	0.72	55.0	5.18e-01	80.7%	99.0%
3589193	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.72	49.0	5.43e-01	71.1%	90.8%
3584520	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.71	53.0	4.78e-01	78.3%	72.7%
4942265	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.67	49.0	4.91e-01	77.1%	91.8%
3956288	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.65	46.0	3.99e-01	75.9%	79.3%
3248091	198.1.1.2 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1	0.64	44.0	4.39e-01	71.1%	74.1%
3277060	198.1.1.2 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1	0.63	44.0	4.58e-01	72.3%	84.0%
3443035	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.61	45.0	4.20e-01	78.3%	78.1%
4962671	101.1.2.925 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF7344	0.59	44.0	3.71e-01	78.3%	56.4%
5045542	2004.1.3.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR	0.59	45.0	3.49e-01	88.0%	35.0%
4399788	206.1.1.70 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1	0.57	43.0	2.93e-01	83.1%	53.2%
3994773	188.1.1.1 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep	0.54	44.0	3.53e-01	92.8%	44.1%
4989807	129.1.1.16 ↗	alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11	0.53	36.0	3.23e-01	71.1%	88.8%

D2 medium residues 150-213

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5040661	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.60	43.0	4.29e-01	81.2%	74.3%