←Back to structures
NC_011273.1__YP_002225128.1__MYRNA_251__00210
Bact-VirNC_011273.1__YP_002225128.1__MYRNA_251__00210
Identity
- Accession:
- NC_011273 ↗
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Taxonomy
TaxID: 546805
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-153
Domain cluster:
rep: IMGVR_UViG_3300035698_023746-3300035698-Ga0374944_608699_9864_12323__D9-152
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02861.26 best | Clp_N | 125.3 | 2.30e-36 | 83.8% | 98.4% |
| PF02861.26 | Clp_N | 55.1 | 1.30e-14 | 43.9% | 50.0% |
D2
high
residues 159-231
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.71 | 44.0 | 3.48e-01 | 71.2% | 32.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3914846 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.91 | 69.0 | 5.35e-01 | 78.1% | 40.7% |
| 4023701 | 148.1.3.261 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small, AAA_lid_9 | 0.86 | 66.0 | 4.26e-01 | 80.8% | 20.0% |
| 3423731 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.81 | 59.0 | 4.67e-01 | 76.7% | 40.7% |
| 3945289 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.78 | 59.0 | 4.86e-01 | 79.5% | 46.4% |
| 3972084 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.76 | 63.0 | 5.28e-01 | 91.8% | 55.2% |
| 3482539 | 192.8.1.288 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Ada3 | 0.76 | 59.0 | 5.29e-01 | 83.6% | 61.0% |
| 3829728 | 601.17.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Group V grass pollen allergen › Group V grass pollen allergen | 0.73 | 50.0 | 3.37e-01 | 71.2% | 21.5% |
| 3705370 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 43.0 | 3.78e-01 | 76.7% | 52.7% |