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NC_011285.1__YP_002241459.1__TROLL4_45__00045

Bact-Vir

NC_011285.1__YP_002241459.1__TROLL4_45__00045

Identity

Accession:
NC_011285 ↗
Kingdom:
phage

Quality

71.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Plotvirus› Mycobacterium_phage_Troll4

TaxID: 561999

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-128
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 51.0 5.85e-01 78.6% 87.1%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 5.76e-01 77.4% 84.7%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 5.44e-01 83.3% 85.5%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.69 54.0 5.67e-01 100.0% 90.9%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 46.0 5.12e-01 79.8% 93.5%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.64 43.0 3.98e-01 79.8% 54.8%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 47.0 5.14e-01 82.1% 97.1%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.30e-01 81.0% 66.3%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 43.0 4.79e-01 78.6% 94.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.60 44.0 4.03e-01 85.7% 59.6%
1si5H01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 40.0 3.59e-01 71.4% 78.2%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.56 43.0 3.79e-01 81.0% 57.4%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 41.0 3.51e-01 81.0% 77.3%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.56 38.0 3.69e-01 76.2% 61.9%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.10e-01 97.6% 62.1%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 31.0 3.45e-01 100.0% 72.1%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.53 35.0 2.76e-01 79.8% 29.8%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.47e-01 70.2% 100.0%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.17e-01 73.8% 77.7%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.11e-01 73.8% 76.5%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.20e-01 73.8% 83.3%
4kc3A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 35.0 3.09e-01 73.8% 73.7%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.76 55.0 5.29e-01 79.8% 66.3%
3730835 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.74 50.0 4.76e-01 79.8% 61.1%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 49.0 5.48e-01 81.0% 87.7%
3676628 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.72 57.0 5.06e-01 86.9% 59.2%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 47.0 5.35e-01 79.8% 86.2%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 53.0 5.60e-01 81.0% 86.7%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.39e-01 79.8% 87.1%
3645842 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.71 56.0 5.77e-01 88.1% 88.7%
3815495 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 48.0 5.17e-01 81.0% 85.7%
3791752 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 47.0 5.25e-01 79.8% 87.7%
3624306 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.69 52.0 4.54e-01 79.8% 64.8%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.69 51.0 4.84e-01 78.6% 74.0%
3934278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 4.76e-01 89.3% 60.0%
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.61e-01 79.8% 94.3%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 55.0 4.54e-01 85.7% 59.3%
3371134 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 4.72e-01 83.3% 86.7%
5040652 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 50.0 3.73e-01 81.0% 58.4%
3183093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.50e-01 89.3% 93.6%
3450257 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.64 45.0 4.39e-01 76.2% 66.3%
3926950 4.1.1.214 ↗ beta barrels › SH3 › SH3 › SH3 › GCN5L1 0.63 44.0 3.89e-01 72.6% 56.7%
3352391 2484.1.1.103 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N 0.62 43.0 3.78e-01 72.6% 76.9%
3188394 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.62 50.0 4.41e-01 85.7% 77.5%
None — 0.62 43.0 3.33e-01 72.6% 52.1%
4220848 2484.1.1.103 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N 0.62 43.0 3.15e-01 72.6% 42.1%
3868602 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 47.0 4.44e-01 81.0% 69.0%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 47.0 4.94e-01 81.0% 93.3%
3174293 101.1.2.284 ↗ alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.61 45.0 3.43e-01 81.0% 35.3%
3719860 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.52e-01 98.8% 68.7%
3897512 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 44.0 4.55e-01 81.0% 98.8%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.57 40.0 4.18e-01 81.0% 81.3%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.28e-01 100.0% 73.7%
5054152 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.57 43.0 3.76e-01 79.8% 60.0%
2429314 2.1.1.43 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 0.57 42.0 3.74e-01 78.6% 78.7%
5058724 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 41.0 3.66e-01 81.0% 62.4%
3231133 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.24e-01 81.0% 61.1%
3375457 4.1.1.159 ↗ beta barrels › SH3 › SH3 › SH3 › Saf4_Yju2 0.53 37.0 3.85e-01 72.6% 88.0%
3705718 9.1.1.46 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_5 0.52 36.0 3.07e-01 72.6% 100.0%
5039871 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 45.0 3.25e-01 100.0% 86.9%
3337433 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.52 31.0 3.21e-01 100.0% 63.7%
3739683 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.52 39.0 3.68e-01 84.5% 78.2%
3706357 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.50 42.0 3.19e-01 96.4% 94.7%