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NC_011290.1__YP_002241946.1__GUMBALL_51__00051

Bact-Vir

NC_011290.1__YP_002241946.1__GUMBALL_51__00051

Identity

Accession:
NC_011290 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Plotvirus› Mycobacterium_phage_Gumball

TaxID: 561998

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-81
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.86 56.0 6.30e-01 100.0% 86.0%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 57.0 6.59e-01 100.0% 98.1%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 51.0 5.58e-01 100.0% 80.0%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.77 50.0 5.57e-01 100.0% 84.5%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 53.0 5.50e-01 100.0% 80.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 54.0 5.39e-01 100.0% 76.0%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 53.0 4.95e-01 100.0% 63.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 55.0 5.55e-01 100.0% 81.1%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 4.48e-01 100.0% 52.8%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 54.0 5.64e-01 100.0% 91.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.18e-01 100.0% 79.2%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 51.0 5.50e-01 100.0% 92.1%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 53.0 5.60e-01 100.0% 91.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 5.94e-01 100.0% 98.5%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 47.0 5.05e-01 100.0% 90.3%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 5.31e-01 100.0% 93.8%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 39.0 4.27e-01 91.9% 73.8%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 42.0 4.77e-01 100.0% 98.0%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.06e-01 100.0% 71.8%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.59 48.0 4.20e-01 100.0% 57.3%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 36.0 3.98e-01 93.2% 80.7%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.57 40.0 4.00e-01 100.0% 71.4%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 35.0 3.79e-01 70.3% 77.0%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.08e-01 74.3% 56.4%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.07e-01 73.0% 53.5%
5a0tB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 39.0 2.67e-01 82.4% 74.7%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.52 43.0 3.82e-01 95.9% 89.4%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.81e-01 93.2% 95.1%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.51 39.0 3.56e-01 83.8% 86.4%
3t37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.04e-01 97.3% 59.8%
1fouA02 2.40.500.10 Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein) 0.50 39.0 3.29e-01 100.0% 47.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.89 55.0 6.37e-01 100.0% 85.5%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.88 55.0 6.34e-01 100.0% 87.0%
3976834 4.1.1.156 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2158 0.87 51.0 6.13e-01 100.0% 88.0%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.86 55.0 5.48e-01 100.0% 64.0%
3296864 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.85 50.0 5.52e-01 100.0% 73.3%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 48.0 5.35e-01 97.3% 75.0%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 52.0 5.74e-01 100.0% 83.3%
4138563 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 51.0 5.46e-01 100.0% 75.4%
4964768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 52.0 5.69e-01 100.0% 85.0%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.77 50.0 5.70e-01 100.0% 89.1%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 49.0 4.17e-01 100.0% 42.6%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 51.0 4.71e-01 100.0% 54.7%
3568329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 50.0 5.58e-01 100.0% 85.0%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 50.0 4.62e-01 100.0% 53.7%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 50.0 4.17e-01 100.0% 41.7%
5065747 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.75 47.0 4.38e-01 100.0% 52.2%
3912726 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 57.0 5.88e-01 100.0% 85.7%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.74 50.0 4.38e-01 100.0% 48.6%
3500542 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 48.0 4.44e-01 100.0% 54.4%
3214474 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.74 52.0 4.71e-01 100.0% 55.0%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 53.0 5.88e-01 98.6% 96.6%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 56.0 5.65e-01 100.0% 81.3%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 53.0 4.80e-01 100.0% 58.0%
531 4.1.1.281 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KALRN 0.72 55.0 5.55e-01 100.0% 81.1%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.79e-01 100.0% 96.7%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 47.0 4.82e-01 100.0% 71.4%
3392130 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.70 50.0 5.32e-01 100.0% 84.6%
157323 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.64e-01 100.0% 91.2%
4138935 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.69 58.0 5.77e-01 100.0% 88.0%
3924975 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.68 49.0 4.82e-01 100.0% 70.0%
3503332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.88e-01 98.6% 98.5%
3570230 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 53.0 4.97e-01 100.0% 67.8%
3766868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 48.0 4.57e-01 100.0% 65.6%
3482677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.86e-01 100.0% 84.3%
4975478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 53.0 5.13e-01 100.0% 84.7%
4340107 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 52.0 5.23e-01 100.0% 96.0%
4673831 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.58 47.0 3.62e-01 89.2% 62.4%
3194464 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.57 46.0 3.57e-01 87.8% 59.4%
3501741 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.54 37.0 4.01e-01 97.3% 90.0%
3277340 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.54 43.0 3.39e-01 87.8% 57.5%
3998402 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.54 34.0 3.13e-01 90.5% 50.0%
4551833 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.53 46.0 3.90e-01 100.0% 90.8%
4676087 2003.1.2.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.53 46.0 3.93e-01 100.0% 94.4%
5051610 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 43.0 2.83e-01 95.9% 38.2%
3181897 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.52 43.0 2.91e-01 97.3% 68.0%
4012113 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 43.0 2.92e-01 97.3% 69.1%
3198870 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.52 43.0 2.91e-01 97.3% 68.0%
4993758 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 42.0 2.73e-01 95.9% 37.0%
None — 0.51 42.0 2.99e-01 95.9% 47.7%
4965853 1.1.3.9 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › PF26227 0.50 32.0 3.42e-01 82.4% 75.4%