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NC_011357.1__YP_002274285.1__Stx2-1717_gp77__00074
Bact-VirNC_011357.1__YP_002274285.1__Stx2-1717_gp77__00074
Identity
- Accession:
- NC_011357 ↗
- Kingdom:
- phage
Quality
85.0
mean pLDDT
Taxonomy
TaxID: 563769
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 45-193
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eebA00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.72 | 58.0 | 5.16e-01 | 100.0% | 61.0% |
| 3qy7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.65 | 44.0 | 3.68e-01 | 96.0% | 41.3% |
| 3geeA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 36.0 | 3.80e-01 | 98.7% | 60.2% |
| 1iv0A00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.57 | 37.0 | 4.44e-01 | 95.3% | 100.0% |
| 4dsqA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 36.0 | 3.41e-01 | 89.9% | 52.9% |
| 3f2bA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 42.0 | 3.54e-01 | 96.6% | 46.6% |
| 1qwjB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.56 | 34.0 | 2.98e-01 | 97.3% | 39.3% |
| 2qw5A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.55 | 41.0 | 3.20e-01 | 100.0% | 34.9% |
| 1avaA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 42.0 | 3.28e-01 | 100.0% | 34.8% |
| 4wsoA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 36.0 | 3.13e-01 | 95.3% | 43.6% |
| 1h7nA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 46.0 | 3.57e-01 | 95.3% | 66.2% |
| 8b0qA01 | 3.30.420.340 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain | 0.53 | 40.0 | 3.82e-01 | 100.0% | 67.0% |
| 3ianA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 43.0 | 3.38e-01 | 100.0% | 41.7% |
| 4h5uA00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.52 | 42.0 | 3.41e-01 | 89.3% | 81.5% |
| 4ha7B00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.51 | 31.0 | 2.82e-01 | 98.0% | 42.9% |
| 4cd8A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 42.0 | 3.30e-01 | 100.0% | 41.9% |
| 4r27B00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 45.0 | 3.30e-01 | 97.3% | 57.0% |
| 1aq0A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 45.0 | 3.59e-01 | 100.0% | 48.0% |
| 4aw9A00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 47.0 | 3.84e-01 | 100.0% | 92.4% |
| 2zdsB00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.50 | 44.0 | 3.47e-01 | 96.0% | 66.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3986250 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.94 | 76.0 | 6.72e-01 | 100.0% | 61.5% |
| 4961024 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.60 | 33.0 | 3.17e-01 | 84.6% | 45.3% |
| 4108700 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.59 | 39.0 | 3.05e-01 | 98.7% | 30.6% |
| 4028645 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.57 | 42.0 | 3.20e-01 | 97.3% | 32.9% |
| 2527144 | 2002.1.1.150 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NAGidase | 0.57 | 45.0 | 3.44e-01 | 100.0% | 36.7% |
| 4599948 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 42.0 | 4.07e-01 | 100.0% | 68.2% |
| 4058415 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.56 | 39.0 | 3.91e-01 | 98.7% | 69.3% |
| 3320604 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.56 | 40.0 | 3.82e-01 | 97.3% | 61.7% |
| 5001440 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.56 | 40.0 | 3.87e-01 | 100.0% | 65.5% |
| 4182115 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.56 | 42.0 | 4.08e-01 | 100.0% | 71.9% |
| 4553746 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.55 | 39.0 | 3.93e-01 | 99.3% | 71.3% |
| 3304144 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.54 | 38.0 | 3.69e-01 | 84.6% | 62.9% |
| 4130494 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.54 | 40.0 | 3.93e-01 | 99.3% | 70.3% |
| 5075712 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.53 | 40.0 | 3.79e-01 | 100.0% | 66.3% |
| 3379915 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.53 | 48.0 | 3.95e-01 | 100.0% | 65.7% |
| 3823461 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.52 | 47.0 | 3.68e-01 | 98.7% | 90.8% |
| 3927138 | 2003.1.1.141 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Polysacc_synt_2, GDP_Man_Dehyd | 0.51 | 46.0 | 3.46e-01 | 100.0% | 62.4% |
| 5060347 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.51 | 44.0 | 3.08e-01 | 95.3% | 39.6% |
| 4151184 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.50 | 42.0 | 3.82e-01 | 99.3% | 68.4% |
| 5062530 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.50 | 34.0 | 3.07e-01 | 98.7% | 47.9% |
| 4972851 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.50 | 43.0 | 3.41e-01 | 95.3% | 61.5% |