←Back to structures
NC_011398.1__YP_002290883.1__phiCD27_gp07__00007
Bact-VirNC_011398.1__YP_002290883.1__phiCD27_gp07__00007
Identity
- Accession:
- NC_011398 ↗
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Taxonomy
TaxID: 2849704
Cluster
View cluster (166 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-19_183-345
Domain cluster:
rep: DQ340064.2__ABC61276.1__X__00022__D272-425
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.70 | 37.0 | 5.13e-01 | 79.7% | 100.0% |
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.68 | 40.0 | 5.12e-01 | 86.3% | 99.0% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.60 | 38.0 | 4.67e-01 | 86.3% | 97.5% |
| 3bqwA02 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.59 | 43.0 | 4.95e-01 | 86.8% | 100.0% |
| 3gtzA00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.57 | 33.0 | 4.07e-01 | 83.0% | 90.4% |
| 1xeuA02 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 25.0 | 3.49e-01 | 87.4% | 96.4% |
| 1pbyA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 23.0 | 3.31e-01 | 85.7% | 96.1% |
| 4uozA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 21.0 | 3.15e-01 | 86.3% | 100.0% |
| 4bfeA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 24.0 | 3.38e-01 | 84.6% | 96.3% |
| 1yawB01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.51 | 32.0 | 3.72e-01 | 82.4% | 85.1% |
| 1vk3A02 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.51 | 32.0 | 3.70e-01 | 83.0% | 85.2% |
| 3mcqA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.51 | 33.0 | 3.77e-01 | 93.4% | 88.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4208534 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.75 | 33.0 | 4.14e-01 | 79.1% | 66.1% |
| 5081698 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.72 | 66.0 | 5.45e-01 | 96.7% | 94.1% |
| 11367 | 2485.3.1.6 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › ENCP4 | 0.70 | 37.0 | 5.13e-01 | 79.7% | 100.0% |
| 3075730 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.67 | 60.0 | 4.92e-01 | 96.2% | 88.7% |
| 2899245 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.66 | 60.0 | 4.77e-01 | 96.2% | 92.2% |
| 2995627 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.66 | 60.0 | 5.00e-01 | 96.7% | 92.0% |
| 2989372 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.65 | 59.0 | 4.89e-01 | 96.2% | 92.8% |
| 3944238 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.65 | 59.0 | 5.04e-01 | 96.7% | 98.9% |
| 4884207 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.64 | 59.0 | 4.95e-01 | 97.3% | 91.7% |
| 5081487 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.64 | 58.0 | 5.02e-01 | 97.3% | 100.0% |
| 3088027 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.63 | 57.0 | 4.96e-01 | 96.7% | 91.8% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.62 | 57.0 | 5.05e-01 | 97.3% | 91.8% |
| 4319052 | 7510.1.1.3 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › FA_synthesis | 0.58 | 34.0 | 3.76e-01 | 89.6% | 71.0% |
| 3587769 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.57 | 53.0 | 4.44e-01 | 97.8% | 90.3% |
| 3516911 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.53 | 31.0 | 3.34e-01 | 86.8% | 67.3% |
| 4172022 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.53 | 34.0 | 4.01e-01 | 95.1% | 92.3% |
D2
medium
residues 20-89
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4p1mB01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.65 | 36.0 | 4.48e-01 | 74.3% | 86.7% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 51.0 | 3.44e-01 | 90.0% | 39.3% |
| 8p2bA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.61 | 47.0 | 4.52e-01 | 84.3% | 100.0% |
| 1epaA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 42.0 | 3.20e-01 | 91.4% | 33.1% |
| 3qitB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 45.0 | 2.98e-01 | 84.3% | 33.2% |
| 4ffeX00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.57 | 47.0 | 3.73e-01 | 94.3% | 82.7% |
| 3l9rA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.55 | 48.0 | 3.67e-01 | 100.0% | 100.0% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 46.0 | 3.61e-01 | 95.7% | 46.5% |
| 5c82A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 44.0 | 3.37e-01 | 90.0% | 37.1% |
| 4i1sB00 | 4.10.80.340 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.54 | 27.0 | 3.04e-01 | 84.3% | 59.6% |
| 2qlzA02 | 6.10.250.2960 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 45.0 | 4.25e-01 | 92.9% | 86.0% |
| 2iv2X01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.53 | 37.0 | 4.06e-01 | 85.7% | 96.4% |
| 2jhnA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.53 | 44.0 | 3.77e-01 | 92.9% | 70.8% |
| 1oo0A00 | 3.30.1560.10 | Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi | 0.52 | 43.0 | 3.43e-01 | 92.9% | 91.7% |
| 2pmaA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 42.0 | 3.64e-01 | 95.7% | 92.6% |
| 4n01A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 38.0 | 3.30e-01 | 81.4% | 97.4% |
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.38e-01 | 81.4% | 95.3% |
| 1milA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.50 | 36.0 | 3.21e-01 | 77.1% | 55.8% |
| 2ox7A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.50 | 30.0 | 3.09e-01 | 88.6% | 59.4% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2755815 | 372.2.1.2 ↗ | a+b complex topology › RNase A-like › EndoU-like › EndoU-like › CoV_NSP15_C | 0.72 | 33.0 | 2.50e-01 | 72.9% | 19.0% |
| 3964101 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.64 | 29.0 | 3.17e-01 | 72.9% | 46.7% |
| 3711519 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.64 | 31.0 | 2.30e-01 | 72.9% | 18.2% |
| 5012709 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 41.0 | 2.83e-01 | 70.0% | 20.0% |
| 3357663 | 383.1.1.0 ↗ | few secondary structure elements › Defensin-like › Defensin-related › Defensin-related | 0.62 | 30.0 | 3.80e-01 | 72.9% | 96.7% |
| 5039400 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.60 | 51.0 | 3.42e-01 | 100.0% | 67.7% |
| 4346143 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.59 | 47.0 | 3.35e-01 | 84.3% | 36.0% |
| 4873527 | 7579.1.1.13 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH | 0.59 | 47.0 | 3.27e-01 | 87.1% | 44.4% |
| 4645958 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.59 | 45.0 | 4.81e-01 | 82.9% | 100.0% |
| 4443892 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.59 | 40.0 | 4.51e-01 | 71.4% | 100.0% |
| 1235359 | 331.1.1.8 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AfAlkA-like_TBP-like | 0.59 | 42.0 | 3.75e-01 | 90.0% | 53.5% |
| 3267835 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.59 | 50.0 | 4.40e-01 | 95.7% | 63.8% |
| 3433500 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.59 | 27.0 | 3.14e-01 | 72.9% | 54.0% |
| 4369577 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.59 | 44.0 | 4.69e-01 | 81.4% | 98.3% |
| 3426409 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.58 | 28.0 | 3.61e-01 | 87.1% | 96.7% |
| 3971910 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.57 | 40.0 | 2.61e-01 | 92.9% | 17.6% |
| 4426175 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.57 | 43.0 | 4.34e-01 | 81.4% | 82.9% |
| 4175039 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.57 | 40.0 | 4.47e-01 | 74.3% | 100.0% |
| 4336488 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 31.0 | 3.19e-01 | 78.6% | 52.9% |
| 3725909 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.57 | 48.0 | 4.44e-01 | 97.1% | 77.7% |
| 3309149 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.56 | 40.0 | 4.12e-01 | 94.3% | 80.0% |
| 4076804 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.55 | 39.0 | 4.25e-01 | 74.3% | 96.4% |
| 4590962 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.55 | 41.0 | 4.38e-01 | 81.4% | 96.7% |
| 3680162 | 375.1.1.148 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RPA_interact_C | 0.55 | 26.0 | 3.28e-01 | 72.9% | 71.4% |
| 5064574 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.55 | 42.0 | 4.50e-01 | 87.1% | 100.0% |
| 3689293 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.55 | 44.0 | 4.28e-01 | 90.0% | 83.3% |
| 5046254 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 25.0 | 2.99e-01 | 85.7% | 60.0% |
| 4966168 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 44.0 | 2.79e-01 | 90.0% | 90.4% |
| 4944756 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.53 | 38.0 | 4.08e-01 | 78.6% | 98.3% |
| 5023720 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.53 | 24.0 | 2.95e-01 | 72.9% | 66.7% |
| 4834236 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 37.0 | 3.02e-01 | 77.1% | 44.2% |
| 3215682 | 101.1.1.7 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 | 0.51 | 37.0 | 3.06e-01 | 78.6% | 52.3% |
| 4960230 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.50 | 41.0 | 2.95e-01 | 91.4% | 89.5% |
| 3937854 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.50 | 36.0 | 3.23e-01 | 77.1% | 57.0% |