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NC_011398.1__YP_002290888.1__phiCD27_gp12__00012
Bact-VirNC_011398.1__YP_002290888.1__phiCD27_gp12__00012
Identity
- Accession:
- NC_011398 ↗
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Taxonomy
TaxID: 2849704
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-66
Domain cluster:
rep: NC_030945.1__YP_009276842.1__BH791_gp36__00036__D17-65
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26160.1 best | YqzN_YkzM | 62.6 | 4.00e-17 | 98.0% | 96.2% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gftA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.76 | 60.0 | 5.59e-01 | 88.0% | 71.4% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.71 | 47.0 | 4.26e-01 | 70.0% | 98.6% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.70 | 46.0 | 4.38e-01 | 70.0% | 57.6% |
| 1dv0A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.70 | 53.0 | 5.50e-01 | 96.0% | 97.8% |
| 2oqoA00 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.69 | 48.0 | 3.36e-01 | 84.0% | 21.0% |
| 2g3qA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.69 | 51.0 | 5.35e-01 | 90.0% | 95.3% |
| 3e46A02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 49.0 | 5.09e-01 | 88.0% | 93.0% |
| 1tteA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 53.0 | 5.12e-01 | 96.0% | 86.0% |
| 3cdlB02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 50.0 | 3.64e-01 | 86.0% | 90.2% |
| 4i5lB01 | 1.10.238.230 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.63 | 52.0 | 4.31e-01 | 100.0% | 53.0% |
| 1jkwA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 49.0 | 4.08e-01 | 94.0% | 63.4% |
| 1tvzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.61 | 50.0 | 3.74e-01 | 100.0% | 41.5% |
| 4mn0A00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.60 | 47.0 | 3.37e-01 | 94.0% | 27.1% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.59 | 40.0 | 3.81e-01 | 74.0% | 57.8% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.58 | 43.0 | 3.98e-01 | 86.0% | 73.6% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.58 | 45.0 | 4.06e-01 | 100.0% | 91.7% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.55 | 46.0 | 3.59e-01 | 98.0% | 66.4% |
| 1a8uA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 44.0 | 2.73e-01 | 88.0% | 21.7% |
| 2fdrA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 44.0 | 4.02e-01 | 92.0% | 67.2% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.53 | 43.0 | 4.06e-01 | 98.0% | 95.5% |
| 3vbbE01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.51 | 42.0 | 3.26e-01 | 94.0% | 93.3% |
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 40.0 | 3.50e-01 | 96.0% | 86.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3801470 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.78 | 63.0 | 6.38e-01 | 94.0% | 96.0% |
| 3623078 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.77 | 62.0 | 6.24e-01 | 92.0% | 94.0% |
| 3838966 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.75 | 61.0 | 5.70e-01 | 96.0% | 72.3% |
| 3802239 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.74 | 55.0 | 5.57e-01 | 82.0% | 96.0% |
| 4148430 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.74 | 55.0 | 5.59e-01 | 84.0% | 92.0% |
| 4239905 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.72 | 54.0 | 5.35e-01 | 84.0% | 90.7% |
| 5080185 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 58.0 | 5.14e-01 | 96.0% | 61.3% |
| 4555056 | 141.1.1.6 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › HEPPP_synt_1 | 0.70 | 47.0 | 3.07e-01 | 70.0% | 21.0% |
| 4506648 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.67 | 53.0 | 5.40e-01 | 98.0% | 96.0% |
| 4939455 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.66 | 53.0 | 5.10e-01 | 94.0% | 90.0% |
| 4207710 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.66 | 52.0 | 5.06e-01 | 98.0% | 82.8% |
| 3505290 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 51.0 | 4.53e-01 | 92.0% | 61.3% |
| 4351042 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.65 | 51.0 | 4.89e-01 | 92.0% | 79.7% |
| 4182099 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.63 | 49.0 | 4.94e-01 | 90.0% | 98.0% |
| 2881975 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.63 | 49.0 | 4.94e-01 | 92.0% | 94.0% |
| 3486637 | 4230.1.1.1 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DSPc | 0.60 | 38.0 | 3.55e-01 | 70.0% | 49.2% |
| 4303377 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.60 | 45.0 | 4.58e-01 | 94.0% | 95.9% |
| 4253754 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.60 | 44.0 | 4.37e-01 | 94.0% | 79.7% |
| 4057642 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 50.0 | 3.84e-01 | 100.0% | 63.8% |
| 3525450 | 101.1.8.22 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › CSPP1_C | 0.58 | 48.0 | 4.70e-01 | 98.0% | 85.5% |
| 3902177 | 632.2.1.31 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › CSPP1_C | 0.57 | 47.0 | 4.63e-01 | 98.0% | 85.5% |
| 3734125 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 41.0 | 2.50e-01 | 78.0% | 16.1% |
| 4280714 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.54 | 43.0 | 4.22e-01 | 92.0% | 81.8% |