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NC_011398.1__YP_002290906.1__phiCD27_gp30__00030

Bact-Vir

NC_011398.1__YP_002290906.1__phiCD27_gp30__00030

Identity

Accession:
NC_011398 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Colneyvirus› Clostridioides_phage_phiCD27

TaxID: 2849704

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-70
PDB
Domain cluster: rep: MF360958.1__ASV44115.1__PBI_SCTP2_100__00100__D3-70
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4y85C01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 40.0 3.31e-01 88.4% 34.7%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 34.0 3.67e-01 87.0% 61.0%
3n9xA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 36.0 2.81e-01 91.3% 26.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.61 40.0 4.54e-01 98.6% 87.0%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 30.0 3.60e-01 87.0% 75.6%
2wanA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.30e-01 95.7% 90.3%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 28.0 2.89e-01 85.5% 45.5%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 3.77e-01 97.1% 74.6%
1nnwB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.55 44.0 3.10e-01 92.8% 87.6%
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 39.0 4.30e-01 88.4% 96.3%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 3.02e-01 89.9% 96.5%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 37.0 2.37e-01 76.8% 35.6%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 33.0 3.56e-01 95.7% 85.7%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 2.73e-01 97.1% 73.9%
1s3lA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 40.0 3.13e-01 91.3% 98.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4999817 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 39.0 4.78e-01 85.5% 82.2%
3181317 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 45.0 4.27e-01 94.2% 58.2%
3221229 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 41.0 5.04e-01 94.2% 95.6%
4027507 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.67 37.0 3.01e-01 85.5% 31.7%
4823230 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.64 40.0 3.81e-01 87.0% 54.3%
3657336 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.63 35.0 2.31e-01 91.3% 12.3%
4932673 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.61 32.0 2.99e-01 87.0% 38.9%
4025894 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 32.0 2.73e-01 87.0% 32.1%
4962338 375.1.1.234 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_PaaD 0.60 34.0 4.43e-01 87.0% 100.0%
4213539 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 40.0 4.12e-01 94.2% 72.3%
3933561 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 32.0 2.83e-01 88.4% 34.3%
3590827 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 39.0 4.04e-01 94.2% 72.3%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 39.0 4.04e-01 94.2% 73.8%
3894798 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.57 35.0 4.22e-01 88.4% 95.6%
5043972 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.55 29.0 2.64e-01 88.4% 35.4%
4400911 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 30.0 3.60e-01 89.9% 90.0%
4379563 375.1.1.289 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.54 33.0 3.83e-01 88.4% 95.6%
3456076 5.1.3.159 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.53 44.0 3.07e-01 94.2% 82.4%
5000387 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 30.0 2.94e-01 100.0% 49.3%
5054123 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 42.0 4.20e-01 97.1% 88.6%
5052708 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.50 39.0 2.84e-01 89.9% 96.1%
3415181 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.50 39.0 2.66e-01 89.9% 77.7%
3920343 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.50 43.0 3.35e-01 95.7% 58.7%