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NC_011398.1__YP_002290916.1__phiCD27_gp40__00040

Bact-Vir

NC_011398.1__YP_002290916.1__phiCD27_gp40__00040

Identity

Accession:
NC_011398 ↗
Kingdom:
phage

Quality

73.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Colneyvirus› Clostridioides_phage_phiCD27

TaxID: 2849704

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cjsC01 3.30.60.120 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.82 55.0 6.34e-01 74.1% 100.0%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.80 56.0 5.37e-01 79.6% 64.5%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.77 69.0 5.19e-01 98.1% 43.9%
3o58V00 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.75 53.0 5.16e-01 79.6% 67.8%
3s93A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.75 36.0 3.16e-01 81.5% 30.0%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.74 40.0 3.65e-01 83.3% 39.4%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.74 53.0 4.42e-01 77.8% 54.6%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 50.0 3.73e-01 75.9% 30.1%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 38.0 2.74e-01 96.3% 19.9%
2nrjA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.68 42.0 2.55e-01 100.0% 10.0%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.68 48.0 3.91e-01 94.4% 39.4%
4lmoA00 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.67 57.0 3.65e-01 94.4% 64.9%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.66 53.0 3.99e-01 90.7% 58.1%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 47.0 4.41e-01 79.6% 86.4%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 46.0 2.91e-01 79.6% 56.3%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 42.0 3.40e-01 70.4% 68.9%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.62 43.0 3.40e-01 98.1% 33.6%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.59 40.0 3.80e-01 72.2% 88.1%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.59 42.0 3.49e-01 74.1% 75.0%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.58 41.0 2.67e-01 94.4% 17.2%
2h84A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 33.0 2.48e-01 74.1% 18.9%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.34e-01 92.6% 32.9%
4nzrM01 3.30.1370.200 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 37.0 3.21e-01 90.7% 42.9%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 2.93e-01 88.9% 79.1%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 3.61e-01 79.6% 67.5%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.55 39.0 3.64e-01 77.8% 84.3%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.55 38.0 2.77e-01 72.2% 45.3%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 38.0 3.55e-01 85.2% 61.8%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.52 44.0 2.73e-01 92.6% 55.9%
3gwmA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 43.0 3.28e-01 94.4% 45.7%
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 37.0 3.04e-01 81.5% 72.1%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 42.0 3.64e-01 90.7% 100.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.49e-01 90.7% 93.5%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3634154 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.85 52.0 4.90e-01 75.9% 52.3%
3372361 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.84 57.0 6.41e-01 79.6% 95.0%
3696633 3393.1.1.2 ↗ extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.82 59.0 4.81e-01 75.9% 49.5%
3248192 7581.1.1.39 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C, FAE1_CUT1_RppA 0.81 42.0 2.42e-01 81.5% 6.4%
3399728 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.80 53.0 3.62e-01 79.6% 20.7%
3722860 2004.1.1.463 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd 0.79 58.0 3.35e-01 77.8% 10.7%
3680502 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.77 54.0 3.92e-01 79.6% 28.6%
3740447 109.4.1.526 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc 0.77 44.0 2.55e-01 92.6% 7.3%
4118829 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.76 53.0 3.92e-01 75.9% 28.6%
5079975 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.74 53.0 3.88e-01 75.9% 28.3%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.71 49.0 3.87e-01 74.1% 33.9%
3484196 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 51.0 4.70e-01 81.5% 60.0%
3750265 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 55.0 5.39e-01 87.0% 98.3%
5040546 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 50.0 3.56e-01 75.9% 38.6%
3394478 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.69 50.0 5.37e-01 79.6% 93.3%
4941487 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 48.0 3.71e-01 75.9% 33.3%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 48.0 3.87e-01 74.1% 38.2%
5048161 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 49.0 3.61e-01 75.9% 42.9%
167429 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.68 38.0 2.74e-01 96.3% 19.9%
5057974 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 47.0 3.69e-01 77.8% 34.8%
3409703 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 47.0 3.53e-01 74.1% 45.4%
4980177 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.65 41.0 3.17e-01 100.0% 29.2%
4940198 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 4.16e-01 92.6% 55.8%
4027743 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.65 52.0 3.24e-01 90.7% 23.1%
3834208 2004.5.1.3 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN 0.64 43.0 2.83e-01 70.4% 71.2%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.60 49.0 3.73e-01 90.7% 53.2%
3630104 192.24.1.6 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.58 48.0 2.87e-01 90.7% 16.1%
5029842 101.1.2.645 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.58 39.0 3.16e-01 70.4% 61.9%
4033043 616.1.1.41 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.58 44.0 3.70e-01 92.6% 48.9%
3798502 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.58 44.0 2.83e-01 90.7% 23.7%
3798149 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.58 44.0 2.86e-01 90.7% 25.4%
3689251 5050.1.1.2 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.56 49.0 3.16e-01 100.0% 75.6%
3633537 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 46.0 3.35e-01 90.7% 69.0%
3505845 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.55 37.0 3.08e-01 70.4% 72.0%
3979431 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 45.0 3.26e-01 90.7% 72.7%
3282985 101.1.2.508 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25872 0.54 37.0 3.23e-01 70.4% 75.3%
3439131 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.54 37.0 3.01e-01 70.4% 67.0%
3592209 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 45.0 3.55e-01 92.6% 83.6%
5053763 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.16e-01 74.1% 63.3%
3223457 101.1.2.661 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.52 44.0 2.83e-01 98.1% 41.4%
4335280 2003.1.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N 0.52 41.0 2.84e-01 90.7% 91.0%
4890753 4342.1.1.2 ↗ alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › YqgF 0.52 41.0 2.82e-01 88.9% 43.8%
3599123 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 2.52e-01 87.0% 46.4%
4961222 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.51 35.0 3.13e-01 72.2% 75.3%
4024983 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.43e-01 83.3% 82.5%
3714022 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.51 33.0 3.19e-01 81.5% 58.3%
4932636 266.1.1.1 ↗ a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt 0.50 34.0 2.39e-01 72.2% 21.9%