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NC_011399.1__YP_002290964.1__RSM3_gp13__00013
Bact-VirNC_011399.1__YP_002290964.1__RSM3_gp13__00013
Identity
- Accession:
- NC_011399 ↗
- Kingdom:
- phage
Quality
73.1
mean pLDDT
Taxonomy
Loebvirae›
Hofneiviricota›
Faserviricetes›
Tubulavirales›
Inoviridae›
Habenivirus›
Ralstonia_phage_RSM3
TaxID: 520962
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-30_106-134
D2
medium
residues 151-237
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3edvA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 77.0 | 5.92e-01 | 100.0% | 65.6% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.82 | 74.0 | 5.30e-01 | 97.7% | 37.6% |
| 4hkaA01 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 59.0 | 3.90e-01 | 73.6% | 68.7% |
| 3gnlB02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 40.0 | 4.55e-01 | 71.3% | 63.2% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.79 | 72.0 | 5.22e-01 | 100.0% | 38.5% |
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.74 | 57.0 | 4.44e-01 | 80.5% | 66.5% |
| 4dvyP03 | 1.20.120.1270 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CagA exotoxin domain III | 0.74 | 61.0 | 4.90e-01 | 100.0% | 47.0% |
| 4mtxD00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.73 | 64.0 | 6.26e-01 | 98.9% | 92.6% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.70 | 48.0 | 4.47e-01 | 74.7% | 55.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3294656 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.93 | 88.0 | 5.56e-01 | 100.0% | 71.1% |
| 3852270 | 3755.3.1.629 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF27241 | 0.91 | 87.0 | 5.72e-01 | 100.0% | 29.0% |
| 4516988 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.91 | 79.0 | 6.58e-01 | 95.4% | 57.1% |
| 3757866 | 632.22.1.152 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF27241 | 0.90 | 85.0 | 6.76e-01 | 100.0% | 55.0% |
| 3849660 | 11.2.1.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 | 0.89 | 76.0 | 6.49e-01 | 94.3% | 60.0% |
| 4994917 | 3834.1.1.25 ↗ | alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121 | 0.87 | 81.0 | 5.69e-01 | 100.0% | 74.7% |
| 3203407 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.85 | 63.0 | 4.75e-01 | 77.0% | 35.3% |
| 4246573 | 3755.1.1.8 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › FliJ | 0.84 | 75.0 | 6.13e-01 | 95.4% | 56.7% |
| 4775818 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.82 | 74.0 | 5.65e-01 | 97.7% | 46.8% |
| 5072280 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.82 | 75.0 | 5.53e-01 | 100.0% | 80.9% |
| 3579766 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.82 | 59.0 | 4.01e-01 | 79.3% | 23.2% |
| 5039649 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.82 | 60.0 | 5.36e-01 | 82.8% | 55.8% |
| 3991247 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.81 | 68.0 | 4.78e-01 | 88.5% | 33.9% |
| 5070059 | 3834.1.1.25 ↗ | alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121 | 0.79 | 72.0 | 5.12e-01 | 100.0% | 55.2% |
| 4108723 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.78 | 66.0 | 6.49e-01 | 97.7% | 85.3% |
| 3754607 | 605.1.1.108 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE | 0.70 | 61.0 | 5.71e-01 | 94.3% | 99.0% |
| 4249652 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.70 | 47.0 | 4.55e-01 | 72.4% | 61.0% |
| 4166693 | 7013.1.1.1 ↗ | alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 | 0.65 | 49.0 | 3.87e-01 | 81.6% | 85.9% |