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NC_011421.1__YP_002300463.1__SPO1_192__00187

Bact-Vir

NC_011421.1__YP_002300463.1__SPO1_192__00187

Identity

Accession:
NC_011421 ↗
Kingdom:
phage

Quality

72.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Okubovirus› Bacillus_phage_SPO1

TaxID: 2884427

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 48-133
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.91 63.0 7.44e-01 90.7% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.88 65.0 7.40e-01 95.3% 100.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.88 63.0 7.28e-01 91.9% 100.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.88 62.0 7.16e-01 91.9% 100.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.83 58.0 6.61e-01 95.3% 96.9%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 61.0 6.71e-01 98.8% 100.0%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 50.0 4.28e-01 89.5% 45.9%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 55.0 5.99e-01 91.9% 98.6%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.68 59.0 5.56e-01 100.0% 78.8%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.54e-01 94.2% 93.3%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 39.0 4.67e-01 75.6% 87.9%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.66 60.0 5.22e-01 98.8% 79.5%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 4.66e-01 83.7% 88.7%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.64 40.0 4.75e-01 77.9% 96.4%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 48.0 5.09e-01 98.8% 92.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.66e-01 93.0% 61.4%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 39.0 4.06e-01 84.9% 66.7%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.84e-01 93.0% 80.3%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 37.0 4.29e-01 79.1% 82.8%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 44.0 4.79e-01 93.0% 94.3%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.60 53.0 5.29e-01 97.7% 100.0%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.60 50.0 4.93e-01 89.5% 90.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 4.29e-01 97.7% 96.8%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.57 50.0 4.28e-01 100.0% 94.3%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.56 32.0 3.94e-01 73.3% 100.0%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.73e-01 83.7% 80.9%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 48.0 4.49e-01 95.3% 81.7%
4rljA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 41.0 3.46e-01 79.1% 96.5%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 35.0 3.84e-01 70.9% 83.8%
2uvaG08 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 43.0 3.02e-01 90.7% 60.4%
1z6bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 43.0 3.68e-01 90.7% 98.6%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 39.0 2.83e-01 80.2% 62.9%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 39.0 3.62e-01 79.1% 76.1%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 39.0 2.91e-01 80.2% 62.2%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 39.0 3.51e-01 82.6% 96.8%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 43.0 3.85e-01 95.3% 100.0%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.43e-01 83.7% 78.0%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.92 68.0 7.78e-01 94.2% 100.0%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.92 67.0 7.73e-01 94.2% 100.0%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.91 66.0 7.62e-01 94.2% 100.0%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.90 66.0 7.64e-01 91.9% 100.0%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.90 66.0 7.56e-01 94.2% 100.0%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.90 66.0 7.53e-01 94.2% 100.0%
3950208 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.90 66.0 7.51e-01 94.2% 100.0%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.90 66.0 7.51e-01 94.2% 100.0%
4213539 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.90 65.0 7.42e-01 93.0% 98.5%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.89 64.0 7.39e-01 93.0% 98.5%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.89 65.0 7.45e-01 94.2% 100.0%
4041586 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.89 65.0 7.48e-01 94.2% 100.0%
4524363 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.89 65.0 7.47e-01 94.2% 100.0%
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.89 65.0 7.47e-01 93.0% 100.0%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.89 65.0 7.42e-01 94.2% 100.0%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.88 65.0 7.36e-01 94.2% 100.0%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.88 65.0 7.43e-01 91.9% 100.0%
4942589 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.84 64.0 7.11e-01 94.2% 98.6%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.83 67.0 7.11e-01 97.7% 97.3%
4863266 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.83 58.0 6.64e-01 96.5% 96.9%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.82 60.0 6.28e-01 94.2% 82.5%
3483489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 61.0 6.52e-01 95.3% 89.3%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.81 62.0 6.85e-01 100.0% 100.0%
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.80 62.0 6.77e-01 100.0% 100.0%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 56.0 6.30e-01 90.7% 100.0%
3791752 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.72e-01 94.2% 98.5%
3226615 4.1.1.389 ↗ beta barrels › SH3 › SH3 › SH3 › PF30352 0.70 55.0 5.32e-01 96.5% 74.7%
3484700 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.70 51.0 4.84e-01 87.2% 65.0%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 57.0 6.12e-01 89.5% 98.7%
4976092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.08e-01 91.9% 76.7%
608 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.68 59.0 5.56e-01 100.0% 78.8%
3650798 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.37e-01 95.3% 100.0%
3934278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.34e-01 95.3% 71.3%
3676628 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.67 48.0 4.28e-01 84.9% 53.3%
4932882 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.67 60.0 5.18e-01 100.0% 77.8%
4051081 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.66 45.0 5.08e-01 87.2% 100.0%
5067458 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 42.0 4.97e-01 80.2% 100.0%
2552660 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.66 60.0 5.23e-01 100.0% 81.1%
3511007 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 50.0 4.47e-01 93.0% 58.3%
4028378 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.65 59.0 5.15e-01 100.0% 81.5%
3639466 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.65 59.0 4.88e-01 98.8% 71.0%
4215369 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.65 58.0 5.11e-01 98.8% 81.6%
4941831 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.65 59.0 5.10e-01 100.0% 80.8%
3249352 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.65 58.0 5.04e-01 98.8% 79.2%
5000523 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.64 58.0 5.17e-01 98.8% 82.5%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.59e-01 89.5% 100.0%
4650682 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.64 57.0 4.99e-01 98.8% 77.7%
3371134 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.98e-01 95.3% 97.5%
3802808 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.64 57.0 4.79e-01 98.8% 82.8%
4941652 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.64 57.0 5.00e-01 98.8% 81.6%
5058724 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 57.0 5.01e-01 98.8% 81.6%
4517543 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 57.0 5.00e-01 98.8% 82.4%
5054152 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 56.0 4.97e-01 98.8% 80.0%
4078003 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 57.0 4.96e-01 100.0% 82.3%
5035282 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 57.0 4.99e-01 100.0% 84.0%
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 5.16e-01 84.9% 97.1%
4013811 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.63 54.0 5.34e-01 93.0% 93.3%
5073192 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.63 43.0 4.86e-01 83.7% 93.8%
4983074 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 55.0 4.82e-01 98.8% 80.8%
5036729 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 55.0 4.92e-01 98.8% 80.8%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.62 49.0 4.51e-01 84.9% 86.4%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.61 47.0 4.86e-01 91.9% 87.5%
3719860 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.66e-01 91.9% 70.4%
3768742 4.1.1.355 ↗ beta barrels › SH3 › SH3 › SH3 › WAC_Acf1_DNA_bd 0.60 54.0 3.78e-01 96.5% 38.5%
4954224 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.60 54.0 5.25e-01 97.7% 90.5%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.60 50.0 4.64e-01 88.4% 93.3%
3245735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.29e-01 83.7% 84.3%
4138935 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.60 49.0 5.18e-01 88.4% 98.7%
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 52.0 4.57e-01 100.0% 83.1%
3842361 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.59 51.0 4.96e-01 96.5% 100.0%
3304525 4.1.1.173 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4216 0.58 51.0 4.76e-01 98.8% 85.5%
3597364 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 52.0 3.42e-01 98.8% 89.8%
3783958 9.16.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › Rot1 0.55 48.0 3.97e-01 100.0% 84.8%
3520852 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.55 41.0 3.45e-01 80.2% 64.7%
3347232 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 3.02e-01 93.0% 37.2%
4991994 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 33.0 3.87e-01 75.6% 96.4%
4335022 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.99e-01 84.9% 74.7%
3572436 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 40.0 3.76e-01 84.9% 64.5%
3938060 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 42.0 3.34e-01 87.2% 50.9%
3869065 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 40.0 3.86e-01 84.9% 71.0%
3972298 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.52 39.0 3.30e-01 80.2% 94.0%
4011470 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 42.0 2.73e-01 89.5% 29.8%