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NC_011523.1__YP_002302542.1__BPAP50_gp30__00030
Bact-VirNC_011523.1__YP_002302542.1__BPAP50_gp30__00030
Identity
- Accession:
- NC_011523 ↗
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Tectiliviricetes›
Kalamavirales›
Tectiviridae›
Betatectivirus›
Bacillus_phage_AP50
TaxID: 2880538
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-47
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xf5B00 | 1.10.10.1530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.87 | 74.0 | 7.06e-01 | 97.6% | 82.0% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.76 | 64.0 | 5.34e-01 | 100.0% | 84.8% |
| 3hzsA00 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.72 | 60.0 | 3.90e-01 | 100.0% | 86.1% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.70 | 58.0 | 4.42e-01 | 97.6% | 46.2% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.68 | 55.0 | 4.06e-01 | 92.9% | 59.3% |
| 3mggA02 | 6.10.140.1580 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 55.0 | 4.33e-01 | 92.9% | 76.4% |
| 3n2oA04 | 1.10.287.3440 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 46.0 | 4.37e-01 | 76.2% | 76.9% |
| 2jaeA03 | 1.20.1440.240 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.65 | 46.0 | 3.52e-01 | 76.2% | 33.7% |
| 7xcnM01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.65 | 47.0 | 3.95e-01 | 81.0% | 80.8% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.65 | 45.0 | 4.06e-01 | 71.4% | 51.7% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.64 | 50.0 | 3.82e-01 | 100.0% | 38.2% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.63 | 51.0 | 4.01e-01 | 97.6% | 83.0% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 48.0 | 4.61e-01 | 97.6% | 81.5% |
| 1u1jA01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.62 | 50.0 | 2.94e-01 | 100.0% | 20.8% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 43.0 | 3.90e-01 | 76.2% | 53.3% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.61 | 48.0 | 4.29e-01 | 92.9% | 68.3% |
| 4issA02 | 1.20.58.1700 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 41.0 | 3.48e-01 | 88.1% | 40.8% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.60 | 48.0 | 3.09e-01 | 95.2% | 20.8% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 48.0 | 4.64e-01 | 92.9% | 83.3% |
| 4ezeB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.58 | 50.0 | 3.03e-01 | 100.0% | 48.1% |
| 2mqkA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 43.0 | 3.87e-01 | 85.7% | 55.4% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 44.0 | 3.83e-01 | 100.0% | 54.9% |
| 2gtvX00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.57 | 47.0 | 3.66e-01 | 100.0% | 57.7% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.56 | 42.0 | 4.09e-01 | 88.1% | 90.0% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 42.0 | 2.84e-01 | 97.6% | 39.7% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 39.0 | 3.47e-01 | 97.6% | 85.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588564 | 3151.1.1.2 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › Phage_XkdX | 0.93 | 78.0 | 7.98e-01 | 90.5% | 95.0% |
| 4032841 | 3151.1.1.2 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › Phage_XkdX | 0.89 | 75.0 | 7.39e-01 | 92.9% | 86.7% |
| 397561 | 3151.1.1.1 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1_GP23-1 | 0.87 | 74.0 | 7.06e-01 | 97.6% | 82.0% |
| 4986013 | 4994.1.1.0 ↗ | alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like | 0.77 | 66.0 | 5.27e-01 | 100.0% | 82.4% |
| 4381851 | 3151.1.1.2 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › Phage_XkdX | 0.71 | 56.0 | 5.60e-01 | 95.2% | 91.1% |
| 3279151 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.71 | 54.0 | 4.28e-01 | 85.7% | 71.1% |
| 5041446 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.69 | 56.0 | 4.82e-01 | 100.0% | 80.0% |
| 2956 | 102.1.1.43 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Topo-V_HhH_2_2nd | 0.69 | 55.0 | 5.10e-01 | 97.6% | 71.2% |
| 3965957 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.66 | 46.0 | 3.81e-01 | 76.2% | 41.3% |
| 4053440 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.65 | 52.0 | 4.53e-01 | 100.0% | 74.7% |
| 3971349 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.64 | 44.0 | 3.94e-01 | 76.2% | 51.7% |
| 3280977 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.63 | 51.0 | 3.80e-01 | 100.0% | 40.8% |
| 4525341 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.63 | 44.0 | 3.80e-01 | 78.6% | 45.7% |
| 4976486 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 52.0 | 4.75e-01 | 100.0% | 76.7% |
| 4937490 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.63 | 47.0 | 4.73e-01 | 95.2% | 100.0% |
| 3215991 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 48.0 | 4.38e-01 | 97.6% | 72.3% |
| 3471267 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.60 | 42.0 | 2.40e-01 | 78.6% | 6.3% |
| 3945031 | 5086.1.1.86 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YBHG | 0.60 | 42.0 | 3.05e-01 | 78.6% | 24.6% |
| 4167193 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.60 | 46.0 | 4.57e-01 | 100.0% | 97.8% |
| 3982740 | 5086.1.1.190 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP | 0.59 | 42.0 | 2.73e-01 | 76.2% | 16.0% |
| 3342138 | 3151.1.1.0 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 | 0.57 | 40.0 | 3.99e-01 | 88.1% | 71.1% |
| 3970512 | 5086.1.1.189 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CzcB | 0.57 | 41.0 | 3.48e-01 | 78.6% | 44.0% |
| 3964187 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.56 | 40.0 | 3.34e-01 | 78.6% | 41.2% |
| 3307008 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.56 | 39.0 | 3.79e-01 | 88.1% | 68.1% |
| 3988890 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.54 | 41.0 | 4.08e-01 | 85.7% | 80.0% |