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NC_011551.1__YP_002308550.1__APSE237__00037
Bact-VirNC_011551.1__YP_002308550.1__APSE237__00037
Identity
- Accession:
- NC_011551 ↗
- Kingdom:
- phage
Quality
64.0
mean pLDDT
Taxonomy
TaxID: 340054
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-37_59-74
D2
medium
residues 38-58_75-110
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hzfA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.62 | 47.0 | 2.99e-01 | 82.5% | 37.1% |
| 2ruhA00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.62 | 50.0 | 3.86e-01 | 91.2% | 46.6% |
| 4hv0C00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.60 | 46.0 | 4.08e-01 | 87.7% | 96.6% |
| 1q9cA01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.59 | 46.0 | 3.52e-01 | 87.7% | 85.0% |
| 2vyrA00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.59 | 47.0 | 4.21e-01 | 91.2% | 71.8% |
| 1eejA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 39.0 | 2.98e-01 | 70.2% | 93.5% |
| 7ce1A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 35.0 | 3.66e-01 | 70.2% | 67.3% |
| 1lshA02 | 1.25.10.20 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical | 0.57 | 41.0 | 2.60e-01 | 80.7% | 32.5% |
| 1phkA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.56 | 41.0 | 2.98e-01 | 80.7% | 89.8% |
| 1fbwA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.55 | 44.0 | 2.71e-01 | 93.0% | 42.1% |
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.55 | 48.0 | 4.12e-01 | 100.0% | 80.4% |
| 3hhwK01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.55 | 38.0 | 2.72e-01 | 73.7% | 92.3% |
| 2cw7A02 | 1.10.10.1010 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV | 0.55 | 41.0 | 3.23e-01 | 87.7% | 59.6% |
| 3focA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 42.0 | 2.83e-01 | 94.7% | 35.1% |
| 4b7yD00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 40.0 | 3.38e-01 | 78.9% | 82.5% |
| 3td9A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 43.0 | 3.00e-01 | 89.5% | 94.5% |
| 4itjB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 41.0 | 2.87e-01 | 84.2% | 83.0% |
| 3kmuA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 42.0 | 3.03e-01 | 91.2% | 41.3% |
| 2afaA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 43.0 | 2.67e-01 | 96.5% | 91.4% |
| 1r7lA00 | 3.30.2120.10 | Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like | 0.52 | 41.0 | 3.55e-01 | 96.5% | 81.6% |
| 1jwjA01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.51 | 42.0 | 3.10e-01 | 96.5% | 60.9% |
| 3l2pA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.51 | 41.0 | 2.99e-01 | 94.7% | 50.5% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.51 | 35.0 | 3.19e-01 | 91.2% | 49.4% |
| 7fsfA02 | 3.30.56.80 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.50 | 42.0 | 4.03e-01 | 100.0% | 95.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3506247 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.97 | 86.0 | 5.68e-01 | 93.0% | 35.4% |
| 3567433 | 109.2.1.24 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › TED_complement | 0.70 | 50.0 | 3.18e-01 | 75.4% | 30.5% |
| None | — | 0.67 | 58.0 | 3.68e-01 | 100.0% | 21.4% | |
| 4936165 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.66 | 48.0 | 3.07e-01 | 84.2% | 16.1% |
| 3603695 | 2004.1.1.496 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1, UvrD_C_2 | 0.63 | 44.0 | 3.18e-01 | 75.4% | 92.4% |
| 3726362 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 44.0 | 3.94e-01 | 87.7% | 65.6% |
| 3885988 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.58 | 47.0 | 3.37e-01 | 94.7% | 80.0% |
| 4945963 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.57 | 43.0 | 3.89e-01 | 82.5% | 73.8% |
| 3958907 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.57 | 43.0 | 2.87e-01 | 89.5% | 83.4% |
| 5043639 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.57 | 42.0 | 2.70e-01 | 82.5% | 29.0% |
| 3610083 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 39.0 | 3.31e-01 | 87.7% | 42.0% |
| 2881503 | 1189.1.1.2 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG_B | 0.56 | 45.0 | 2.81e-01 | 93.0% | 81.7% |
| 3266691 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 41.0 | 3.53e-01 | 80.7% | 64.2% |
| 4958862 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 44.0 | 3.61e-01 | 93.0% | 75.7% |
| 3320298 | 4955.1.1.8 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › AtuA_ferredoxin | 0.54 | 44.0 | 3.55e-01 | 94.7% | 59.7% |
| 3699815 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 40.0 | 3.87e-01 | 78.9% | 100.0% |
| 5050259 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.54 | 40.0 | 2.86e-01 | 80.7% | 80.0% |
| 3742452 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 41.0 | 2.57e-01 | 82.5% | 53.9% |
| 5064497 | 2003.1.1.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M | 0.53 | 40.0 | 2.77e-01 | 89.5% | 94.9% |
| 5083438 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.53 | 41.0 | 3.03e-01 | 87.7% | 33.9% |
| 3788541 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.53 | 43.0 | 3.05e-01 | 91.2% | 72.4% |
| 4140739 | 1057.1.1.1 ↗ | a+b two layers › Endonuclease PI-TkoII domain IV › Endonuclease PI-TkoII domain IV › Endonuclease PI-TkoII domain IV › PI-TkoII_IV | 0.53 | 40.0 | 3.13e-01 | 87.7% | 59.3% |
| 3921946 | 101.1.2.507 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 | 0.51 | 36.0 | 2.72e-01 | 80.7% | 28.4% |
| 3351011 | 206.1.1.7 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase | 0.51 | 39.0 | 2.66e-01 | 89.5% | 56.2% |
| 1879413 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.51 | 44.0 | 3.87e-01 | 98.2% | 81.4% |
| 3505829 | 101.1.2.507 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 | 0.50 | 36.0 | 2.77e-01 | 80.7% | 32.7% |