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NC_011614.1__YP_002332492.1__SauSIPLA88_gp17__00016

Bact-Vir

NC_011614.1__YP_002332492.1__SauSIPLA88_gp17__00016

Identity

Accession:
NC_011614 ↗
Kingdom:
phage

Quality

77.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dubowvirus› Staphylococcus_phage_vB_SauS-phiIPLA88

TaxID: 2681608

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-109
PDB
Domain cluster: rep: IMGVR_UViG_3300021493_000001-3300021493-Ga0190306_1000018121__D17-108
D2 high residues 148-226
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07261.17 best DnaB_2 33.2 4.90e-08 92.4% 81.1%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.70 57.0 3.85e-01 87.3% 87.4%
4ye6A01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.67 56.0 5.17e-01 100.0% 70.2%
1z6tA03 1.10.8.430 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Helical domain of apoptotic protease-activating factors 0.66 56.0 5.60e-01 94.9% 98.8%
3d8bB02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 52.0 5.18e-01 88.6% 95.1%
4bemJ00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.62 50.0 3.87e-01 89.9% 89.0%
3kp1E02 1.10.8.1000 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like 0.62 49.0 5.08e-01 94.9% 100.0%
2bl2A00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.58 47.0 3.83e-01 89.9% 71.8%
5tj5E00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.56 44.0 3.76e-01 89.9% 98.6%
6xy9A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.90e-01 88.6% 93.7%
2yjkC00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 40.0 3.36e-01 86.1% 61.8%
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.52 41.0 3.53e-01 88.6% 65.2%
3feuA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 40.0 3.23e-01 89.9% 53.0%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 40.0 3.17e-01 88.6% 54.4%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 44.0 3.14e-01 100.0% 50.8%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031651 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.94 88.0 8.18e-01 98.7% 82.1%
3989035 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.81 74.0 6.93e-01 100.0% 84.2%
4048400 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.79 71.0 7.00e-01 100.0% 92.9%
3587918 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.77 69.0 6.53e-01 100.0% 84.2%
3466081 148.1.3.205 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540 0.72 55.0 5.93e-01 89.9% 100.0%
4013940 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 63.0 5.73e-01 100.0% 84.5%
3278722 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 59.0 5.89e-01 98.7% 92.5%
3821573 148.1.3.205 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540 0.70 57.0 5.43e-01 89.9% 75.8%
3639254 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 59.0 5.85e-01 100.0% 88.2%
4010880 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 60.0 5.53e-01 100.0% 84.8%
3971575 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 54.0 5.22e-01 100.0% 75.6%
3385104 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 57.0 5.69e-01 98.7% 91.3%
3547029 148.1.3.221 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NPHP3_hel 0.68 59.0 5.81e-01 100.0% 91.8%
3226552 148.1.3.5 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.68 52.0 5.47e-01 83.5% 100.0%
3432776 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 56.0 5.18e-01 94.9% 81.9%
3631224 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.67 54.0 5.19e-01 94.9% 76.3%
3726362 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 58.0 5.58e-01 100.0% 97.8%
3289269 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 57.0 5.39e-01 97.5% 91.6%
4672223 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.64 50.0 5.11e-01 87.3% 92.0%
4019514 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 52.0 4.86e-01 100.0% 70.5%
3484633 148.1.3.5 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.64 54.0 5.40e-01 94.9% 95.0%
4121495 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 50.0 5.07e-01 88.6% 94.7%
5052308 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.63 52.0 5.02e-01 93.7% 95.6%
4007459 181.1.1.3 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › EII-Sor 0.59 50.0 4.37e-01 93.7% 68.3%
3987775 101.1.2.453 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_DnaB 0.59 50.0 3.62e-01 94.9% 53.0%
4958181 1075.5.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt 0.57 44.0 3.35e-01 86.1% 92.4%
3742721 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.56 41.0 3.85e-01 78.5% 88.0%
3204448 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.55 44.0 3.11e-01 91.1% 61.4%
3180704 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.54 39.0 3.53e-01 78.5% 74.8%
4878364 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.53 43.0 4.39e-01 89.9% 100.0%