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NC_012530.1__YP_002790708.1__lb338_phage_29__00029
Bact-VirNC_012530.1__YP_002790708.1__lb338_phage_29__00029
Identity
- Accession:
- NC_012530 ↗
- Kingdom:
- phage
Quality
93.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Mooreparkvirus›
Lactobacillus_phage_Lb338-1
TaxID: 2892342
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v8pA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.64 | 45.0 | 3.27e-01 | 73.6% | 48.4% |
| 1go3F02 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 44.0 | 4.66e-01 | 73.6% | 80.9% |
| 6vtmB00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 51.0 | 4.31e-01 | 96.2% | 93.8% |
| 1jlcB03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.60 | 50.0 | 3.74e-01 | 92.5% | 42.9% |
| 1uwkB01 | 3.40.1770.10 | Alpha Beta › 3-Layer(aba) Sandwich › Urocanase fold › Urocanase superfamily | 0.58 | 48.0 | 3.00e-01 | 94.3% | 28.4% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 46.0 | 4.53e-01 | 100.0% | 85.7% |
| 3fk5A01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.56 | 44.0 | 3.13e-01 | 96.2% | 83.8% |
| 2qnuA00 | 3.40.1730.10 | Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain | 0.54 | 41.0 | 2.87e-01 | 88.7% | 86.7% |
| 3wiwA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 40.0 | 2.51e-01 | 88.7% | 80.9% |
| 2o5hA00 | 1.10.3510.10 | Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like | 0.52 | 37.0 | 2.96e-01 | 81.1% | 72.7% |
| 3dddA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 40.0 | 3.26e-01 | 98.1% | 46.9% |
| 1snlA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 43.0 | 3.59e-01 | 98.1% | 75.8% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.08e-01 | 81.1% | 84.0% |
| 4mmhA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.51 | 43.0 | 2.65e-01 | 96.2% | 61.9% |
| 4bpnW02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.51 | 43.0 | 4.35e-01 | 98.1% | 100.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3498779 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.62 | 48.0 | 4.18e-01 | 86.8% | 80.0% |
| 4027206 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 45.0 | 3.41e-01 | 83.0% | 44.3% |
| 3244540 | 375.1.1.89 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like | 0.59 | 40.0 | 3.62e-01 | 71.7% | 72.0% |
| 3603847 | 4.1.1.144 ↗ | beta barrels › SH3 › SH3 › SH3 › Ago_PAZ_arc | 0.55 | 43.0 | 3.73e-01 | 96.2% | 54.0% |
| 3226464 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.55 | 47.0 | 3.48e-01 | 94.3% | 54.8% |
| 4160153 | 148.1.3.222 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27254 | 0.55 | 41.0 | 3.85e-01 | 90.6% | 64.3% |
| 4555701 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 44.0 | 2.65e-01 | 98.1% | 14.2% |
| 3505130 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.53 | 43.0 | 2.81e-01 | 94.3% | 86.8% |
| 5037044 | 2003.4.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Thr_synth_N | 0.52 | 39.0 | 2.63e-01 | 86.8% | 29.4% |
| 4497845 | 309.1.2.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD | 0.52 | 42.0 | 3.01e-01 | 96.2% | 89.1% |